Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
109658185.6801068694907e-070.1324016605795360.01881028851526140.147585175611745
109603061.37262741539808e-050.6489008561631420.1059889128980020.151063187180791
109603134.37589507356826e-050.836083884349430.162260027305620.0834571742143558
109330160.8610324819050040.6175226631530310.004459809376585866.04330799690813e-05
109330220.8610324819050040.6175226631530310.004459809376585866.04330799690813e-05

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2L10965818.TA.PASSAC=15GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2L10960306.TC.PASSAC=20GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/11/11/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/0
chr2L10960313.GGG,T,TG,TTG,TTGG,TTTG,TTTGG,TTTTG.PASSAC=21,4,14,10,1,18,2,4GT0/00/00/06/00/03/00/00/06/80/00/00/00/80/00/00/00/00/00/00/20/00/00/10/00/00/10/00/00/06/00/00/00/00/00/00/00/30/06/40/40/00/00/00/00/00/00/00/00/00/00/00/00/00/40/00/00/00/00/00/04/60/06/60/00/00/02/00/00/00/00/00/10/00/00/00/61/01/00/60/30/00/00/00/00/00/00/07/50/00/00/00/00/00/00/20/00/01/10/01/10/04/60/60/01/40/81/00/00/00/00/00/00/00/20/00/11/00/00/00/00/30/00/01/10/00/00/00/30/01/10/30/00/30/00/80/00/00/00/40/00/10/00/06/03/00/03/00/01/16/40/00/00/01/00/00/00/00/00/60/00/00/00/04/60/00/00/00/40/00/00/00/00/06/00/00/10/01/00/30/00/00/30/00/00/10/00/00/00/00/70/01/10/60/30/60/00/00/30/06/03/00/00/00/01/0
chr2L10960313.GGC.PASSAC=20GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/11/11/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/01/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/01/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/0
chr2L10933016.TC.PASSAC=77GT0/00/01/11/10/00/01/11/11/11/10/00/01/10/01/11/10/00/00/00/10/00/00/10/00/01/00/01/11/10/00/00/01/10/01/10/01/11/10/00/00/01/10/00/00/00/01/10/01/11/10/01/10/00/00/00/01/11/10/00/00/00/01/10/00/00/01/10/01/10/01/10/00/00/00/00/00/00/00/01/10/00/01/10/01/10/01/10/00/01/10/00/00/00/01/10/00/00/01/10/00/00/01/11/11/11/11/00/01/00/00/00/01/11/11/11/00/01/10/00/00/01/10/01/11/11/11/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/01/11/10/00/00/00/01/10/00/00/00/01/10/01/10/00/00/01/10/00/00/00/00/00/01/10/00/00/00/01/11/11/11/11/00/01/11/11/10/00/00/01/10/00/01/11/10/01/10/00/00/00/00/01/10/00/00/00/00/01/10/00/01/0
chr2L10933022.AG.PASSAC=78GT0/00/01/11/10/00/01/11/11/11/10/00/01/10/01/11/10/00/00/00/10/00/00/10/00/01/00/01/11/10/00/00/01/10/01/10/01/11/10/00/00/01/10/00/00/00/01/10/01/11/10/01/10/00/00/00/01/11/10/00/00/00/01/10/00/00/01/10/01/10/01/10/10/00/00/00/00/00/00/01/10/00/01/10/01/10/01/10/00/01/10/00/00/00/01/10/00/00/01/10/00/00/01/11/11/11/11/00/01/00/00/00/01/11/11/10/10/01/10/00/00/01/10/01/11/11/11/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/01/11/10/00/00/00/01/10/00/00/00/01/10/01/10/00/00/01/10/00/00/00/00/00/01/10/00/00/00/01/11/11/11/11/00/01/11/11/10/00/00/01/10/00/01/11/10/01/10/00/00/00/00/01/10/00/00/00/00/01/10/00/01/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2L10965818AAGCACCTTTTCCTTGATGAGCGCTGCAGCCTTTTCATAGCTGCTGGCGGC
chr2L10960306CACAGCATTATAGTTGCTTGTTTTTTTTTTTGGGTACCGAAAGTAAGCAACDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2L10960313TTATAGTTGCTTGTTTTTTTTTTTGGGTACCGAAAGTAAGCAACATGGCCADmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768
chr2L10960313TTATAGTTGCTTGTTTTTTTTTTTGGGTACCGAAAGTAAGCAACATGGCCADmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rib_SANGER_5_FBgn0003254 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2L10933016TAATTAAACCTTTAGCTCATATTCTGTGATATTTCTTTACCGCTAACTTAA
chr2L10933022AACCTTTAGCTCATATTCTGTGATATTTCTTTACCGCTAACTTAAGTAATC