Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
126147085.36345649086251e-110.7134493666020490.1118925535499160.373359992426056
126144396.9025436048965e-060.1926033898801360.9299327824764080.327901481997202
126144451.72452511013127e-050.1956788464411290.9280513340556960.384458307010253
126412910.9903329851928111.87270713102961e-050.2546224851541860.0539254951069224
126144262.89641582692053e-050.1627514268621450.7128185636685330.526887610347774

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2L12614708.CG.PASSAC=92GT1/10/00/00/00/00/01/11/10/00/00/01/10/01/10/00/00/00/00/01/00/00/00/00/01/11/00/00/01/11/10/00/01/10/01/10/00/01/11/10/01/11/10/00/01/10/00/00/01/10/01/11/10/10/11/11/10/01/11/10/00/00/01/10/00/00/00/01/10/01/10/00/00/00/00/01/01/11/11/10/00/00/01/10/00/01/10/00/00/00/01/11/10/01/10/01/00/00/00/00/01/11/10/00/00/00/01/10/00/00/00/01/11/01/10/00/00/00/01/10/00/10/01/10/01/11/11/01/11/11/11/11/11/10/01/10/00/00/01/10/00/01/10/00/01/11/11/10/00/01/10/00/01/10/01/11/11/00/00/01/11/11/11/10/00/00/00/00/01/10/00/11/11/11/11/10/01/10/00/01/11/01/10/01/10/00/01/11/10/00/00/00/00/01/10/01/10/01/10/00/01/11/11/10/00/1
chr2L12614439.TG.PASSAC=70GT1/10/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/10/00/01/11/10/00/01/10/01/10/00/01/10/00/00/01/10/00/01/10/00/00/00/00/00/01/10/10/00/00/00/01/10/00/00/00/01/10/00/00/00/01/10/01/11/01/00/00/00/00/01/11/11/10/00/00/00/00/00/01/10/00/00/00/01/11/10/01/10/00/10/00/00/00/00/01/10/00/00/00/00/10/01/00/01/11/11/11/10/00/00/00/01/10/00/10/01/10/01/11/10/01/11/11/11/10/01/10/01/10/00/00/01/10/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/00/01/00/00/00/01/11/11/10/00/00/00/00/11/10/00/01/10/01/10/00/01/10/00/01/10/01/10/01/10/00/01/11/10/00/00/00/00/01/10/01/10/00/00/00/01/10/01/10/00/1
chr2L12614445.CT.PASSAC=69GT1/10/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/10/00/01/11/10/00/01/10/01/10/00/01/10/00/01/11/10/00/01/10/00/00/00/00/00/01/10/10/00/00/00/01/10/00/00/00/01/00/00/00/00/01/10/01/11/01/00/00/00/00/01/11/11/10/00/00/00/00/00/01/10/00/00/00/01/11/10/01/10/00/10/00/00/00/00/01/10/00/00/00/00/00/01/00/01/11/11/11/10/00/00/00/01/10/00/10/01/10/01/11/10/01/11/11/11/10/01/00/01/10/00/00/01/10/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/00/01/00/00/00/01/11/11/10/00/00/00/00/01/10/00/01/10/01/10/00/01/10/00/01/10/01/10/01/10/00/01/11/10/00/00/00/00/01/10/01/10/00/00/00/01/10/01/10/00/1
chr2L12641291.AAA.PASSAC=47GT0/11/00/00/00/01/00/00/01/00/00/00/00/00/00/01/00/00/00/00/01/01/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/01/00/01/01/00/00/00/00/00/00/00/00/01/00/00/00/10/11/01/00/00/00/00/00/00/00/00/01/00/00/01/00/00/01/10/10/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/10/00/00/00/00/00/00/00/00/00/01/00/00/00/10/00/00/01/00/00/00/00/00/00/01/10/01/00/00/00/00/01/01/01/00/11/01/00/10/00/00/00/00/00/00/01/00/10/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/10/00/00/00/00/01/00/00/00/00/10/00/01/01/10/00/00/00/00/00/00/00/01/01/00/00/00/01/10/00/0
chr2L12614426.GA.PASSAC=62GT0/01/10/00/01/10/00/00/00/00/01/10/00/00/00/01/11/10/00/01/01/01/11/11/10/01/00/00/00/00/00/00/00/01/10/01/11/10/00/01/10/00/01/11/10/00/00/00/00/00/00/00/01/01/00/00/01/10/00/01/10/00/00/00/00/01/10/00/00/00/01/00/11/10/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/00/01/00/01/11/00/01/11/11/10/00/00/01/10/00/00/01/10/11/10/00/00/00/00/01/00/00/00/01/11/00/00/00/00/00/01/00/00/00/00/00/00/00/00/01/10/01/10/01/11/10/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/11/00/00/00/00/01/10/00/01/10/00/10/01/10/00/10/00/00/01/10/00/01/11/10/01/10/00/00/01/10/00/00/00/01/10/0
chr2L12614426.GACGG.PASSAC=70GT1/10/00/00/00/00/01/11/10/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/01/10/10/00/01/01/10/00/01/10/01/10/00/01/00/00/00/01/00/00/01/00/00/00/01/10/00/01/10/10/00/00/00/01/10/00/00/00/01/10/00/00/00/01/10/01/00/11/00/00/00/00/01/11/11/10/00/00/00/00/00/01/10/00/00/00/01/11/00/01/10/00/10/00/00/00/00/01/10/00/00/00/00/00/01/00/01/11/11/11/10/00/00/00/01/10/00/10/01/10/01/11/00/01/01/11/11/00/01/00/01/10/00/00/01/10/00/01/00/00/01/10/00/00/00/01/00/00/00/00/00/00/01/00/00/00/01/11/01/10/00/00/00/00/01/10/00/01/10/01/00/00/01/10/00/01/10/01/10/01/00/00/01/11/00/00/00/00/00/01/10/01/10/00/00/00/01/00/01/10/00/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2L12614708CACAATCGGAGATCTATGTATACTCAAAATAGTAAGGAAATGAAAGAACGC
chr2L12614439TTGCATGCAAAGACGTTAAGCCCCTCATTTCAAAAATATCTTTACCTTTTT
chr2L12614445GCAAAGACGTTAAGCCCCTCATTTCAAAAATATCTTTACCTTTTTGTAAAT
chr2L12641291TTGGGGGTTGGGGGCTAAAAAAAAAACGAAGAGAATGCAAAAATCTTTGGGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2L12614426TCAATAATTAATTTTGCATGCAAAGACGTTAAGCCCCTCATTTCAAAAATA
chr2L12614426TCAATAATTAATTTTGCATGCAAAGACGTTAAGCCCCTCATTTCAAAAATANA