Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
150373651.07691233736267e-080.5106770489982640.3189869433605930.177524519281802
150561910.800240131305370.1544978495949550.007892854330589830.00014197506990218
150460700.9291773378007130.1082753644074830.0001903032631163650.0168447996042144
150037020.3492498450284650.4728067554966820.0278153163712950.00020357311972017
150884190.6943723041179070.2218779524354540.2812584539544730.000233293867437585

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2L15037365.CT.PASSAC=38GT0/00/01/11/10/01/10/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/01/01/01/10/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/01/00/00/01/11/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/01/11/10/00/00/00/00/01/10/01/10/00/00/00/00/00/00/01/10/01/00/00/00/00/01/10/00/01/11/10/00/01/10/00/01/10/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/11/10/00/0
chr2L15056191.GT.PASSAC=15GT0/00/00/01/10/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/10/00/00/10/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2L15056191.GAATG,GAGT,GATT,GTT.PASSAC=23,12,1,26GT1/10/00/02/20/02/20/00/01/10/02/20/00/00/00/00/00/00/00/00/00/00/00/11/01/10/10/00/00/00/10/01/10/04/40/00/00/04/20/00/00/01/00/00/00/00/00/04/40/00/00/00/00/40/00/00/01/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/00/04/24/40/00/00/00/00/04/24/41/04/24/20/00/00/00/00/00/00/00/00/00/00/00/04/10/00/04/20/00/00/00/10/00/41/10/00/40/04/00/04/00/00/01/00/01/14/44/40/00/00/00/00/00/00/00/00/00/04/00/00/00/00/00/00/01/10/00/04/30/00/00/00/02/20/00/00/00/00/00/01/12/20/00/00/00/00/00/04/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/04/00/00/41/00/00/00/00/00/00/00/00/04/40/04/10/04/40/00/01/10/00/00/0
chr2L15046070.TA.PASSAC=41GT1/10/00/01/11/10/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/01/00/11/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/11/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/11/10/00/00/00/00/01/10/01/11/11/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/01/10/00/00/00/00/01/10/00/00/00/01/11/11/00/00/01/10/00/00/00/00/00/00/01/10/01/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/10/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/01/10/00/00/0
chr2L15003702.TC.PASSAC=139GT1/10/01/11/11/11/11/11/01/11/11/10/01/11/11/10/00/00/01/01/00/01/11/11/01/11/10/00/01/11/11/11/11/11/11/11/11/11/11/11/10/01/11/10/01/11/10/00/01/11/11/10/01/11/00/00/01/10/01/10/00/01/11/11/10/01/10/01/11/10/01/11/10/01/11/10/00/00/01/10/01/11/11/10/01/11/11/11/11/11/10/01/11/11/10/00/11/11/11/11/11/10/01/11/10/01/11/11/11/11/11/10/01/10/01/11/10/00/01/01/11/11/10/00/00/00/00/11/11/10/01/11/10/01/11/11/11/11/10/00/01/11/11/10/01/10/00/01/11/10/00/01/11/11/10/01/10/11/11/10/01/10/11/01/10/00/01/10/01/10/00/01/10/00/00/01/11/11/11/11/11/10/01/11/10/11/11/11/11/10/01/10/00/00/01/11/11/10/01/11/10/01/11/10/01/1
chr2L15088419.TC.PASSAC=123GT0/01/11/11/10/01/10/00/00/00/01/11/01/10/01/10/00/00/00/10/10/01/10/00/11/10/11/11/11/11/00/00/01/11/10/00/00/01/10/00/01/10/00/01/10/01/11/10/00/00/00/01/11/01/11/11/11/11/11/10/00/01/10/00/01/10/01/10/00/01/11/01/10/00/00/01/11/11/11/01/10/01/10/00/01/11/10/00/01/11/11/10/01/01/11/11/10/01/11/10/00/00/01/11/10/01/10/10/00/01/01/11/11/11/10/01/01/11/10/01/11/01/10/00/01/11/11/00/00/01/10/01/10/00/00/01/11/11/11/11/11/11/10/00/01/10/00/00/01/11/11/11/11/10/01/11/11/10/01/11/10/01/10/01/11/11/11/11/10/01/10/10/01/11/11/11/10/01/10/01/11/11/11/10/00/11/11/10/01/11/10/01/11/10/00/00/00/00/01/11/11/10/01/10/01/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2L15037365GCTGCAAAACGAATCACACGTGACCGCTGGCGATTCGTATTACGATTTTAADmelanogaster-FlyFactorSurvey-HLHm3_SANGER_5_FBgn0002609 , Dmelanogaster-FlyFactorSurvey-tgo_trh_SANGER_5_FBgn0015014 , Dmelanogaster-FlyFactorSurvey-tgo_trh_SANGER_5_FBgn0262139
chr2L15056191ATTTAAAAAACACCGTTAGTTGTAGAATTTTTTTTTAACTTTTTCCATAATDmelanogaster-FlyFactorSurvey-br.PE_SANGER_5_FBgn0000210
chr2L15056191ATTTAAAAAACACCGTTAGTTGTAGAATTTTTTTTTAACTTTTTCCATAATNA
chr2L15046070ATTTATGTTGTTCTCGATCTTAATTGAATGATCTGTACTTACGGTATGGCCDmelanogaster-FlyFactorSurvey-Unc4_Cell_FBgn0024184
chr2L15003702GCACTGGCATTGTTTTAGTTTCAGTGTAATTTCCATTCAATAATTATGCGA
chr2L15088419GTCTTTGCTGTGATGTTTCTCATGTTGCGTTTCCAGGTGAGGAAGTACTTTDmelanogaster-FlyFactorSurvey-CG3838_SANGER_5_FBgn0032130