Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
23616351.61898125252882e-050.008306912710342150.4843353755905720.0158124700791023
23167071.81312749021323e-050.4251045185196290.9811803397828870.538229811314027
23801852.31891286755672e-050.3462468832293390.9859675752346970.163998287746253
23365502.59767674106061e-050.2748786199818530.9601308190236610.269046422099418
23917370.1721408295219524.34055882958633e-050.05454268184283490.0979418494020756

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2L2361635.GA.PASSAC=104GT1/10/00/00/00/00/00/01/10/00/00/01/10/01/11/11/10/01/10/00/10/00/00/00/10/00/00/00/01/10/01/11/11/10/01/10/00/01/10/01/10/01/10/00/00/00/01/10/01/10/01/11/10/01/01/10/01/11/11/10/01/11/10/01/11/11/11/10/01/10/00/00/01/10/00/01/01/11/10/01/10/00/00/00/01/01/10/01/11/10/01/10/00/10/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/01/11/10/01/10/00/01/11/11/10/00/11/11/10/01/11/10/00/01/11/10/00/01/10/01/10/01/10/01/10/00/01/11/11/11/10/00/00/01/10/00/00/01/11/10/01/10/00/01/11/11/11/11/11/11/11/10/00/01/10/00/00/01/11/10/01/01/11/11/11/11/11/10/00/00/11/11/11/11/10/01/11/10/01/10/00/01/11/10/01/10/01/11/11/11/1
chr2L2316707.CT.PASSAC=44GT0/01/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/01/00/01/10/11/00/00/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/10/00/00/00/01/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/01/00/01/11/10/10/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/01/00/00/01/00/01/10/01/11/10/00/00/00/00/00/00/00/11/00/00/00/00/00/00/00/00/00/01/11/00/00/00/00/00/00/10/00/00/00/00/00/00/00/01/10/01/10/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/10/00/00/00/00/00/01/10/01/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/01/10/00/00/00/0
chr2L2380185.CT.PASSAC=160GT0/01/11/11/11/11/11/11/11/11/11/11/11/11/10/00/01/10/01/10/11/11/11/11/10/01/11/11/11/11/11/11/10/01/10/01/11/11/10/01/10/01/11/11/11/11/10/00/10/01/11/11/11/11/01/10/11/10/00/01/11/11/11/10/01/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/11/10/00/01/11/11/11/11/11/11/11/11/11/11/11/11/11/01/11/11/10/11/11/11/00/01/11/11/11/11/11/10/01/11/11/00/01/11/11/11/11/11/11/11/11/01/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/10/00/01/11/11/11/10/01/10/01/11/11/10/00/01/10/00/01/11/11/11/11/11/11/11/10/01/11/10/10/01/11/10/00/01/11/11/11/01/10/01/01/11/10/00/01/10/01/11/10/00/01/11/11/10/01/10/01/1
chr2L2336550.CG,GTTTTT,T.PASSAC=2,30,11GT0/02/30/00/02/10/00/20/00/00/00/00/00/00/00/00/00/30/00/00/00/00/20/00/00/00/00/00/00/00/20/00/00/02/20/00/20/00/00/00/00/00/20/00/00/02/00/20/20/00/00/00/00/00/00/00/00/00/00/02/30/00/00/00/00/00/00/00/00/00/00/00/20/02/33/00/00/00/00/00/02/20/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/10/00/20/00/30/30/20/00/00/00/00/00/00/30/00/00/20/00/20/00/20/00/00/00/00/00/20/30/00/00/00/00/00/00/02/30/00/00/00/00/00/00/00/00/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/20/00/20/00/00/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/2
chr2L2336550.CCT,CTT.PASSAC=11,3GT0/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/00/00/00/00/00/00/00/00/10/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/01/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/10/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2L2391737.GA.PASSAC=120GT0/00/01/11/10/01/10/01/11/11/10/01/11/11/10/00/00/01/11/00/10/00/01/11/00/01/00/01/10/01/11/11/10/00/01/11/11/11/11/11/11/11/11/10/01/10/01/10/10/01/11/11/10/01/11/11/10/01/11/10/01/10/01/11/11/11/11/11/10/01/11/10/11/10/00/01/01/11/10/00/00/00/10/00/01/01/11/10/00/00/01/10/00/10/00/01/00/00/01/10/00/00/01/11/11/11/11/00/00/01/01/10/00/01/11/11/01/11/11/10/00/10/01/11/11/10/00/01/10/01/11/11/11/10/01/10/00/00/01/10/00/00/01/10/00/01/10/00/11/10/00/00/01/11/10/01/10/00/01/11/11/10/01/11/10/00/00/00/01/10/00/01/11/10/01/10/01/10/00/01/11/10/00/00/00/11/11/11/10/01/11/11/10/01/11/11/11/11/10/00/01/11/11/10/01/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2L2361635TTTATAATGGAGACGGATAAAAACGAAATTGAGTGCTTCCAATTCTTCTGC
chr2L2316707AGCAGCACAGTTTGGTGGTTTTCCCCGCTTTCCCAGACCACCACCCCCCCCDmelanogaster-FlyFactorSurvey-dl_FlyReg_FBgn0000462 , Dmelanogaster-FlyFactorSurvey-dl_NBT_FBgn0000462 , Dmelanogaster-JASPAR_CORE-dl_1-MA0022.1
chr2L2380185TGCGCGTCTTCGTCTGATCTGAACCGATGGGGAAGGTCAGATGTGCGGACA
chr2L2336550CTGCATTTCTATTCGAGCATTCTTCTTTTTTTTTTGTGCCCATCAGTGTACDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2L2336550CTGCATTTCTATTCGAGCATTCTTCTTTTTTTTTTGTGCCCATCAGTGTACDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2L2391737TCTGGGAAAACAGGAAAGCAGAAGGAAAACAAAAAGGGGATTCCCCCTCGT