Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
44638493.18396965544042e-070.1227356305734630.3480230887989160.104728622495871
44630935.43687516717603e-070.1346413021687890.1327459848075660.106575690089997
44641805.77046029318768e-070.02684932167855050.1372441878937010.00402885129542407
44641792.01137160485953e-060.0892257116929210.3953361630052740.00873807324978508
44631382.62746502745296e-060.1016247306217850.08152580781961370.0256188395815273

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2L4463849.GA.PASSAC=51GT1/10/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/10/00/00/00/00/00/01/01/10/01/11/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/00/00/10/01/11/10/00/00/01/11/10/00/00/00/00/01/10/00/00/10/10/00/00/00/00/00/01/10/00/00/01/11/11/11/11/10/00/00/00/01/10/00/00/00/11/10/00/00/00/01/10/00/01/10/00/00/00/01/00/00/00/01/10/00/00/00/00/00/00/01/11/10/01/10/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/11/01/10/00/00/01/00/00/00/01/11/11/10/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/1
chr2L4463093.TTATTTGGAGTAAGTAATGCTTATTTAATTTCAGT,TTATTTGGAGTAAGTAATGCTTATTTAATTAAATTTAG,TTATTTGGAGTAAGTAATGCTTATTTAATTTTAG,TTATTTGGAGTAAGTACTGCTTATTTAATTAAATTTAG,TTATTTGGAGTAAGTACTGCTTATTTAATTTTAG.PASSAC=1,57,9,1,1GT2/20/00/00/00/02/20/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/00/00/00/00/22/20/00/02/20/02/20/00/00/00/00/00/02/20/02/20/00/00/02/30/00/00/20/02/22/22/20/00/20/02/22/20/00/00/02/32/20/00/00/00/00/02/20/00/00/20/00/00/00/00/00/02/22/20/00/00/02/34/52/22/22/20/00/00/02/22/20/00/00/02/02/30/00/00/00/01/10/00/02/30/00/00/02/30/20/00/00/02/20/00/00/00/00/00/00/02/32/20/02/20/00/00/00/00/00/02/20/00/02/20/00/00/00/00/00/00/02/20/02/20/00/00/00/00/00/00/02/20/00/00/00/00/02/20/00/00/00/00/00/00/00/02/20/02/32/02/20/00/00/02/02/20/00/02/22/22/20/00/00/00/00/00/00/00/02/22/20/00/00/00/00/00/00/00/00/00/00/02/22/3
chr2L4464180.CA.PASSAC=152GT0/01/11/10/01/10/01/11/11/01/11/10/00/01/10/00/01/11/10/11/11/11/11/11/11/11/00/00/00/00/01/11/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/10/01/11/11/11/01/10/00/01/10/01/10/00/01/10/01/11/11/10/00/01/11/00/01/11/11/11/11/11/10/01/11/11/10/00/00/00/00/01/11/11/11/10/01/11/11/11/00/00/01/11/11/11/11/11/10/01/11/11/11/11/01/10/01/10/01/11/11/11/11/11/11/10/00/01/10/01/01/01/11/11/11/10/01/11/10/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/10/01/11/11/11/11/10/01/11/11/11/11/11/11/11/10/01/10/00/10/01/11/11/10/11/11/11/10/00/00/01/11/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/11/11/11/11/11/10/0
chr2L4464179.GT.PASSAC=152GT0/01/11/10/01/10/01/11/11/11/11/10/00/01/10/00/01/11/11/01/11/11/10/11/11/11/00/00/00/00/01/11/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/10/01/11/11/11/01/10/00/01/10/00/00/00/01/10/01/11/11/10/00/01/11/00/01/11/11/11/11/11/10/01/11/11/10/00/00/00/00/01/11/11/11/10/01/11/11/11/00/00/01/11/11/11/11/11/10/01/11/11/11/11/01/10/01/10/01/11/11/11/11/11/11/10/00/11/10/01/11/01/11/11/11/10/01/11/10/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/10/01/11/11/11/11/10/01/11/11/11/11/11/11/11/10/01/10/00/10/01/11/11/10/11/11/11/10/00/00/01/11/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/11/11/11/11/11/10/0
chr2L4463138.TA,C.PASSAC=8,52GT2/20/00/00/00/02/20/00/00/00/00/00/00/00/00/02/20/00/00/00/00/00/00/20/00/00/21/10/00/02/20/01/10/00/00/00/00/00/00/00/02/20/00/00/01/10/00/00/00/02/21/12/20/00/20/02/21/10/00/00/02/22/20/00/00/02/20/02/20/00/00/22/00/00/00/00/00/02/22/20/00/00/02/22/22/22/22/20/00/00/01/12/20/00/00/02/02/20/00/00/00/00/00/00/02/20/00/00/02/20/20/00/00/02/20/00/00/00/00/00/00/02/22/20/02/20/00/00/00/00/00/01/10/00/02/20/00/00/02/20/00/00/02/20/02/20/00/00/00/00/00/00/02/20/00/00/00/00/02/20/00/00/00/00/00/00/00/02/20/02/22/02/20/00/00/02/02/20/00/02/22/22/20/00/00/00/00/00/00/00/02/22/20/00/00/00/00/00/00/00/00/00/00/01/12/2

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2L4463849GTATTGTTTATTACAGGGATAATGGCGGAAATATGCCGAGTTTGTATGGATDmelanogaster-FlyFactorSurvey-pho_SANGER_10_FBgn0002521 , Dmelanogaster-FlyFactorSurvey-pho_SOLEXA_5_FBgn0002521
chr2L4463093GGTACGCACTTGTTTGTTTATATTTTATTTGGAGTAAGTAATGCTTATTTANA
chr2L4464180ATGCGCGGATTGATTCTGCATCCGCTGCTGATGACGATGGGAAAAGCGACA
chr2L4464179GATGCGCGGATTGATTCTGCATCCGCTGCTGATGACGATGGGAAAAGCGAC
chr2L4463138TATTTAATTTCAGGTCAATGGTGGTAATCTGAGCCCGGAATCGATGGATAA