Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
5424181.46874671043042e-110.804071790199210.3182264004641250.293412603632474
5425151.50905230454861e-100.3916703150097270.587329028403030.0103682265538581
5456523.66457621553401e-080.08524828252259130.7429585506820950.171033525901207
5423824.96821474729489e-080.6514714021887370.8846550966157970.102981144938129
5416376.90576889189926e-080.4029731832579710.354526597765070.0019511968468616

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2L542418.AG.PASSAC=100GT0/00/00/00/00/01/11/10/01/10/01/10/00/01/11/11/10/00/01/10/11/10/00/01/10/00/00/01/11/10/01/10/01/10/00/00/00/01/10/01/11/10/00/00/01/11/11/10/10/01/11/10/00/11/01/10/01/10/01/10/01/11/11/11/10/00/00/01/11/10/00/00/01/11/11/10/01/11/11/10/01/10/01/11/10/01/11/10/00/01/11/11/10/00/00/00/10/01/11/10/01/10/01/11/11/11/11/10/00/01/01/10/01/11/10/00/00/00/00/00/00/00/01/11/10/00/00/11/11/10/01/11/11/10/01/10/00/00/00/00/00/01/10/00/00/00/01/11/10/01/11/11/10/00/01/10/00/00/00/01/11/11/10/00/01/11/10/00/01/10/00/10/00/01/11/11/11/10/00/00/01/10/00/01/10/01/11/10/10/00/00/01/11/11/10/01/10/00/00/00/01/10/00/00/01/1
chr2L542515.TTT.PASSAC=85GT0/00/00/00/00/01/11/10/00/00/01/00/00/01/11/01/10/00/01/00/01/10/00/01/00/00/00/01/00/00/01/10/01/10/00/00/01/11/10/01/11/10/00/00/01/01/11/10/10/01/11/10/00/10/01/10/00/00/01/10/01/11/11/11/00/00/00/01/01/10/00/00/01/11/11/10/01/11/11/10/01/10/01/01/00/01/11/10/00/01/11/11/10/00/00/00/10/01/11/10/01/00/00/01/10/01/11/10/00/00/11/00/01/11/10/00/00/00/00/00/00/00/01/00/00/00/00/11/01/10/00/00/01/00/00/00/00/00/00/00/00/01/00/00/00/00/01/01/10/01/10/01/00/00/01/10/00/00/00/01/01/11/00/00/01/11/10/00/01/10/00/10/00/00/01/00/11/00/00/00/01/10/00/00/00/01/01/10/10/00/00/01/00/01/00/00/00/00/00/00/01/00/00/00/01/1
chr2L545652.CG.PASSAC=19GT0/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/10/01/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/0
chr2L542382.AG.PASSAC=115GT0/01/10/00/00/01/11/10/00/00/01/10/00/01/11/11/10/01/11/10/11/10/00/01/10/00/00/01/11/10/11/10/01/10/00/00/00/01/10/01/11/11/10/00/01/11/11/10/10/01/11/10/00/11/01/10/00/00/01/10/01/11/11/11/10/00/00/01/11/10/00/01/01/11/11/11/11/11/11/10/11/11/11/11/10/01/11/10/00/01/11/11/10/10/00/00/11/11/11/10/01/10/00/01/11/11/11/10/00/00/11/10/01/11/10/00/11/10/01/10/00/00/01/11/10/00/00/11/11/10/01/10/01/11/01/10/00/01/11/11/11/11/10/00/00/00/01/11/10/01/10/01/10/01/11/10/00/00/00/01/11/11/10/00/01/11/10/00/01/11/11/10/00/00/01/11/11/10/00/00/01/10/01/10/01/01/11/11/10/00/00/01/10/01/11/10/00/00/00/01/11/10/00/00/01/1
chr2L541637.CT.PASSAC=155GT1/10/01/11/10/01/11/11/10/00/01/11/11/11/11/11/11/10/01/11/11/11/10/10/11/11/01/11/10/01/11/01/11/11/11/11/11/11/10/01/11/10/00/01/11/10/01/10/11/11/11/11/10/11/11/11/10/01/11/10/01/11/11/11/10/01/11/11/11/10/00/11/01/11/11/10/01/11/10/01/11/10/01/11/10/01/11/11/11/11/11/11/11/00/01/11/10/00/01/10/01/11/10/01/11/11/11/10/01/11/01/11/11/11/10/00/10/01/10/01/11/11/11/11/11/11/10/11/11/11/10/00/01/10/00/00/01/10/01/10/00/01/11/10/01/11/11/11/11/11/10/01/11/10/01/11/11/10/00/01/11/11/11/11/11/11/10/01/11/11/11/01/11/10/01/11/11/11/11/11/11/11/10/00/00/11/11/11/00/01/11/11/10/01/10/00/01/01/10/00/01/11/11/11/11/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2L542418GTCGCCTTTTGGCGCGCTAAGTGCAAGAGCACCTACCTCTCTGTTCGTCCT
chr2L542515GGGAACTCGCGCTTTTCGCAATTTTTACCGCAATTTTTCAGGAATGAACGC
chr2L545652CCGAGTTCCCTCAAGTTCACAACTCTGATAAGCAATTTTGGAAAGCGTGTT
chr2L542382TGTGTGTGTGTGGGTAAGTGGCCTACGAGGGGCTTTGTCGCCTTTTGGCGC
chr2L541637TAAAAAATTAGATGCTTCGGGCCGCGGGGGCTATCCAAAATTAGTCGATTC