Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
101031501.9102855642789e-090.6448427356676590.5849718406967850.199547552883706
101035063.67592073494775e-080.6465561541817330.5483716682968180.848920888632089
101037331.82303276282493e-070.7141750510976910.7922281797564710.412428090419214
101114011.83657609402263e-060.1207744272391380.08014435519240350.0859064540112394
101114032.57636483032551e-060.2315689476964620.05471004352626420.080319799246519

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R10103150.GA.PASSAC=43GT0/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/01/10/00/00/00/00/00/01/10/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/11/00/10/00/01/11/10/00/00/00/01/10/01/10/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/01/11/10/00/00/00/01/00/00/00/00/01/11/10/10/00/01/11/11/11/10/00/00/00/00/00/01/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/01/11/10/00/01/1
chr2R10103506.AG.PASSAC=120GT0/01/10/00/00/00/01/10/00/01/11/11/10/01/10/01/10/01/11/10/01/11/11/11/11/10/00/00/01/10/01/11/10/00/01/10/01/11/10/00/01/10/00/00/01/11/11/11/01/10/01/11/01/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/01/10/00/00/01/11/10/00/01/11/11/11/10/01/10/00/01/10/01/10/00/01/10/01/10/00/01/11/10/01/10/01/10/01/10/00/01/10/00/01/10/00/01/11/11/11/10/00/00/01/11/11/10/01/10/00/01/10/01/01/11/11/10/00/01/11/10/00/00/00/00/01/11/11/11/11/11/10/00/00/00/00/00/01/11/11/10/01/11/10/01/11/10/00/11/11/10/01/11/11/11/11/11/10/11/11/11/10/00/01/11/11/01/11/10/01/11/11/10/01/10/01/01/11/10/01/10/01/11/11/10/01/10/00/01/10/00/0
chr2R10103733.GT.PASSAC=35GT0/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/11/10/01/10/00/00/10/00/00/00/00/01/11/10/00/00/00/01/10/00/00/00/01/11/00/00/00/01/11/10/00/00/01/10/01/11/10/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/01/10/00/00/00/00/00/01/00/00/01/10/01/10/00/00/01/10/01/10/00/00/00/0
chr2R10111401.AC,CCA.PASSAC=121,17GT1/11/11/11/11/10/00/01/10/01/11/11/10/00/01/11/10/01/10/01/11/11/11/11/11/10/00/01/11/11/10/01/10/01/11/11/11/12/21/10/01/11/10/01/10/00/01/11/11/10/01/11/12/00/11/11/11/12/21/10/00/01/10/00/11/11/11/10/00/00/00/00/01/10/00/00/01/11/10/01/10/01/11/11/11/10/01/11/11/10/00/01/11/01/11/12/20/01/12/21/10/01/12/22/22/02/21/11/11/11/11/11/12/21/10/00/01/10/00/01/20/01/11/11/11/10/01/11/11/11/10/00/00/01/21/10/00/00/00/01/10/01/11/11/11/10/01/11/10/00/00/01/11/11/11/11/11/12/01/10/01/11/00/01/11/10/01/10/01/11/11/01/01/11/10/01/11/11/12/20/00/00/00/01/20/01/11/10/01/10/00/01/10/00/02/20/01/21/10/01/10/01/11/11/10/0
chr2R10111403.TA,ACATCACATA,AT.PASSAC=1,121,17GT2/22/22/22/02/00/00/02/20/02/22/02/20/00/02/22/20/02/20/02/22/22/22/02/22/20/00/02/22/22/20/02/20/02/22/22/22/23/32/20/02/22/00/02/20/00/02/22/22/20/02/22/23/00/22/22/02/23/32/20/00/02/20/00/22/22/22/20/00/00/00/00/02/10/00/00/02/22/20/02/00/02/22/02/02/00/02/22/22/00/00/02/02/02/02/23/30/02/23/32/20/02/23/33/33/03/32/22/22/02/22/02/03/32/20/00/02/20/00/02/30/02/02/22/22/20/02/02/02/22/20/00/00/02/32/20/00/00/00/02/00/02/02/22/22/20/02/02/00/00/00/02/22/22/22/22/22/23/02/20/02/22/00/02/22/00/02/20/02/22/02/02/02/22/00/02/22/22/23/30/00/00/00/02/30/02/00/20/02/20/00/02/20/00/03/30/02/32/20/02/20/02/22/22/00/0
chr2R10111403.TTCACATA.PASSAC=19GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/11/11/01/00/00/00/00/00/00/01/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/01/10/00/00/00/00/10/00/00/00/00/00/00/00/00/00/01/10/00/10/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R10103150GGTGATCTTCTTGCCGTTCTTGATGAGCTGCACCCTCACGCACTTGCGGATDmelanogaster-FlyFactorSurvey-GATAd_SANGER_5_FBgn0032223
chr2R10103506GTGGGAAGCACCTCCGAAGGGATTAGCCTTCCATCTGGTGCCCAAATGAGCDmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_2_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_2_FBgn0032651 , Dmelanogaster-FlyFactorSurvey-Ptx1_SOLEXA_FBgn0020912
chr2R10103733GTTTTGAGGTTAGACAGAGTCCAGGCTCGGAAATACTGCCAAATGCATTTT
chr2R10111401TGCTTGTTGATCCCGATGCATTTAACTTAGTTTTGATAGAGCATCCTTTATDmelanogaster-FlyFactorSurvey-zen_FlyReg_FBgn0004053
chr2R10111403CTTGTTGATCCCGATGCATTTAACTTAGTTTTGATAGAGCATCCTTTATTCDmelanogaster-FlyFactorSurvey-zen_FlyReg_FBgn0004053
chr2R10111403CTTGTTGATCCCGATGCATTTAACTTAGTTTTGATAGAGCATCCTTTATTCDmelanogaster-FlyFactorSurvey-zen_FlyReg_FBgn0004053