Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
112093251.31560317421207e-070.6407073247328260.004142417028248520.0893973908222014
112094191.45005943176208e-060.8561973532686220.04277144780203740.111959998400278
112082116.22386876645058e-050.9904640899053670.6030673739804790.689659617374257
112085638.98824728324047e-050.9860945912722180.66040503734540.748742166347114
111687090.7015393404720340.2157030177290770.01233633288123490.000332272085620133

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R11209325.CT.PASSAC=54GT0/00/00/00/00/01/10/00/01/10/00/00/00/00/00/01/10/01/10/00/01/10/01/11/10/00/00/00/00/00/00/00/01/11/10/00/00/00/01/10/01/11/11/10/00/00/00/01/01/10/01/11/10/00/00/00/00/00/00/01/11/11/11/10/00/01/11/10/00/01/10/01/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/11/10/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/01/10/00/01/10/00/00/01/10/01/11/10/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/00/00/01/11/10/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/11/10/01/11/10/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/01/10/00/0
chr2R11209419.AG.PASSAC=63GT1/10/00/00/00/01/10/00/01/10/00/00/00/00/00/01/10/01/11/10/01/10/01/11/10/00/00/00/00/00/01/10/01/11/10/00/00/00/01/10/01/11/11/10/00/00/00/01/01/10/01/11/10/00/00/00/00/00/00/01/11/11/11/10/00/01/11/10/00/01/10/01/00/01/10/00/01/11/10/00/00/01/11/10/00/00/00/00/00/00/00/00/00/01/11/10/10/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/01/10/00/01/11/10/00/01/10/00/00/01/10/01/11/10/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/00/00/01/11/10/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/11/10/01/11/10/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/11/10/00/0
chr2R11208211.AG.PASSAC=122GT1/11/11/11/10/01/11/10/01/11/11/11/10/00/01/11/11/11/11/10/01/10/01/11/10/01/10/00/00/00/01/11/11/11/10/00/00/01/11/10/01/11/11/11/10/00/00/01/11/10/01/11/10/00/01/10/00/00/00/01/11/11/11/10/00/01/11/11/11/11/11/11/11/11/10/00/01/11/10/00/00/01/11/11/10/00/00/00/00/00/00/00/01/11/11/10/10/01/11/10/00/00/01/11/11/10/01/10/01/11/00/00/01/10/01/11/10/01/11/10/01/11/10/00/01/11/11/10/01/10/01/11/10/00/10/01/11/11/11/10/01/10/01/11/10/01/10/01/11/10/01/11/10/00/01/11/11/11/10/01/10/00/00/00/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/10/01/10/00/01/11/11/11/11/10/01/10/01/11/10/00/00/00/00/01/11/10/00/0
chr2R11208563.CG.PASSAC=119GT1/11/11/11/10/01/11/10/01/11/11/11/10/00/01/11/11/11/11/10/01/10/01/11/10/01/10/00/00/00/01/11/11/11/10/00/00/01/11/10/01/11/11/11/10/00/00/01/11/10/01/11/10/00/01/10/00/00/00/01/11/11/11/10/00/01/11/11/11/11/11/11/10/01/10/00/01/11/10/00/00/01/11/11/10/00/00/00/00/00/00/00/01/11/01/10/10/01/11/10/00/00/01/11/11/10/01/10/01/10/10/00/01/10/01/11/10/01/11/10/01/11/10/00/01/11/11/10/01/10/01/11/10/00/10/01/11/11/11/10/01/00/01/11/10/01/10/01/11/10/01/11/10/00/01/11/11/11/10/01/10/00/00/00/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/10/00/00/01/10/00/01/11/11/11/11/10/01/10/01/11/10/00/00/00/00/01/11/10/00/0
chr2R11168709.GT.PASSAC=17GT0/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/01/10/0
chr2R11168709.GGG.PASSAC=47GT1/10/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/01/00/11/11/10/00/00/00/01/10/00/00/10/00/00/00/00/00/00/10/00/00/10/00/00/00/01/10/00/00/00/01/00/00/00/00/01/10/00/01/10/00/01/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/01/00/01/11/10/01/00/01/11/10/00/00/01/10/00/00/00/00/00/00/00/00/01/11/10/01/10/00/00/00/00/00/11/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/01/10/00/11/00/01/10/00/00/01/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/01/11/10/00/00/01/00/00/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R11209325CTTGGCCAGCAGGGAGTACAACACCTCCAGCGTGGTGATCTGCGGGTCCAC
chr2R11209419TGTGGGCGATTTCAAAAAAATTAGATTGAGGAACACAAACTAAGCAGCCCT
chr2R11208211GTAGCCAACGGTAACAGAAAAGTAAGTCGTCCGCTTGCTGCGACTTGAGGTDmelanogaster-FlyFactorSurvey-Hr46_SANGER_5_FBgn0000448 , Dmelanogaster-FlyFactorSurvey-knrl_SANGER_5_FBgn0001323
chr2R11208563GAGAACATCCTTCTTTACCATGCTCGTTACGTAAGCCAGTTCTCCAGCCACDmelanogaster-FlyFactorSurvey-Crc_CG6272_SANGER_5_FBgn0000370 , Dmelanogaster-FlyFactorSurvey-Crc_CG6272_SANGER_5_FBgn0036126 , Dmelanogaster-FlyFactorSurvey-gt_NAR_FBgn0001150 , Dmelanogaster-FlyFactorSurvey-slbo_SANGER_5_FBgn0005638 , Dmelanogaster-FlyFactorSurvey-vri_SANGER_5_FBgn0016076
chr2R11168709CATAAAATATGCATTAACTCCATCGCCCCACGTACTCACCTGGGCGAACTA
chr2R11168709CATAAAATATGCATTAACTCCATCGCCCCACGTACTCACCTGGGCGAACTA