Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
123877439.27442852478231e-090.8529493307234770.8078041217670820.881922276813102
123865537.99927447549331e-060.6676346775505580.8785202411191560.321488537397769
123870453.00251621679935e-050.9675991159507510.584469886322580.474622753217499
123285510.2650197070516548.36498794141991e-050.0226506913491660.58310029393522
124836280.3124266416102390.0001149426442924010.07706234796289390.405031832373035

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R12387743.GT.PASSAC=183GT1/11/11/11/10/01/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/00/01/10/01/11/11/11/11/11/11/11/11/11/10/01/11/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/11/11/11/11/11/10/10/01/11/00/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/11/11/11/11/11/10/11/11/11/11/11/11/11/01/11/11/11/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/10/01/11/11/11/11/11/10/00/01/11/11/11/01/11/11/11/11/11/10/01/10/01/11/11/11/11/01/11/11/11/11/11/11/11/11/11/01/11/11/11/10/01/11/11/11/11/11/11/11/11/10/0
chr2R12386553.CT.PASSAC=185GT1/11/11/11/10/01/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/10/00/01/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/11/11/11/11/11/10/11/11/11/11/11/11/11/01/11/11/11/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/10/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/0
chr2R12387045.AAACAAAT,AAC,AAGC,AAGT,AC,AGAC,AGGC,AGT.PASSAC=1,5,21,143,1,1,1,13GT4/44/40/04/40/04/44/44/44/44/44/44/44/44/40/04/44/40/04/44/40/04/44/48/04/44/44/40/00/08/44/44/44/44/44/44/44/44/44/48/04/40/08/84/40/04/40/00/44/44/44/44/44/84/00/00/04/44/44/44/44/40/04/44/34/44/48/84/20/00/04/30/04/40/00/08/04/44/40/04/40/00/64/44/44/40/04/44/34/44/44/34/42/02/04/34/44/44/44/40/04/44/44/74/40/04/48/84/30/00/04/44/44/44/40/04/44/44/44/40/04/44/44/44/44/44/43/18/44/34/44/34/44/40/44/44/40/04/44/44/34/44/34/30/34/48/84/40/00/04/44/44/44/30/04/40/05/04/44/40/00/00/04/44/44/34/00/04/44/44/34/44/40/04/40/00/30/44/48/84/24/34/40/04/44/40/00/34/40/00/24/44/44/44/44/40/34/34/44/48/88/40/04/44/00/0
chr2R12328551.AT.PASSAC=16GT0/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/10/00/00/00/10/00/00/00/00/00/00/00/00/00/10/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/10/00/00/00/00/00/10/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/0
chr2R12328551.ATA,AA,ATTTTTT.PASSAC=18,1,16GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/10/00/00/10/10/00/00/10/03/30/00/10/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/03/30/03/30/03/00/00/00/00/00/00/00/30/30/10/00/00/00/00/00/00/00/10/00/03/30/00/00/00/00/00/00/00/00/00/00/03/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/10/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/30/00/00/30/00/00/00/10/00/03/10/00/00/00/00/00/10/00/00/00/03/30/00/00/00/10/00/00/00/00/10/00/00/00/03/30/00/00/00/03/30/00/30/00/00/00/00/00/00/00/00/10/00/03/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/0
chr2R12483628.CT.PASSAC=17GT0/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/10/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R12387743CAAAATTCGAGCGTCTGTAAATTTGTATGCCTATTTTTCTGTGTTTTCGCA
chr2R12386553AAAATATATTTATATTATTCTCTACAATGGGAAATAATTCTCATATAAAGC
chr2R12387045AAAATTCCAAAAGGCTATAAAAAAAAACGGGGTGGGCGGAGAAATCGAGATNA
chr2R12328551TCTCTTGCTCTACGATTTTATTTCATTTTTTTTTTTTTTTGTTTTCCTGCGDmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2R12328551TCTCTTGCTCTACGATTTTATTTCATTTTTTTTTTTTTTTGTTTTCCTGCGDmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr2R12483628ACTATCGTTGATGATCGTGCAGAACTCGGCGAGATTCAGAGGATTAACCTC