Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
140220971.13755187696913e-120.005935107837057430.3491957815411030.162757627989916
140221517.99695689572835e-120.007892366202733410.414988633543330.127746375506303
140221737.99695689572835e-120.007892366202733410.414988633543330.127746375506303
140222907.99695689572835e-120.007892366202733410.414988633543330.127746375506303
140223141.62265154356062e-110.005848381510665570.295284222720950.160028234803156

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R14022097.AT.PASSAC=102GT1/11/10/01/11/10/00/01/10/00/00/00/01/11/10/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/01/11/11/11/10/00/00/01/10/01/10/01/11/11/10/00/01/11/00/01/11/10/01/11/10/01/10/00/01/11/10/00/00/00/11/10/01/10/00/01/11/11/11/11/11/10/00/00/00/01/11/11/10/00/00/01/10/00/01/11/10/01/10/01/11/10/01/10/01/11/10/00/11/11/11/11/11/10/00/01/01/11/11/11/11/11/11/11/11/10/01/10/00/01/10/00/01/10/01/10/01/10/00/00/10/00/01/10/01/11/11/11/11/10/01/11/10/00/00/00/00/00/01/10/00/00/00/00/01/10/01/11/10/00/00/00/01/10/00/01/10/01/11/10/01/10/00/00/01/11/10/00/01/11/10/00/00/00/00/01/11/11/11/11/10/00/00/01/11/11/10/00/00/01/11/1
chr2R14022151.CT.PASSAC=104GT1/11/10/01/11/10/00/01/10/00/00/00/11/11/10/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/01/11/11/11/10/00/00/01/10/01/10/01/11/11/10/00/01/11/00/01/11/10/01/11/10/01/10/00/01/01/10/00/00/00/11/10/01/10/00/01/11/11/11/11/11/10/00/00/00/01/11/11/10/00/00/01/10/00/01/11/10/01/10/01/11/10/01/10/01/11/10/00/11/11/11/11/11/10/00/00/11/11/11/11/11/11/11/11/11/10/01/10/00/01/10/01/11/10/01/10/01/10/00/00/00/00/01/10/01/11/11/11/11/10/01/11/10/00/00/00/00/00/01/10/00/00/00/00/01/11/11/11/10/00/00/00/01/10/00/01/10/01/11/10/01/10/00/00/01/11/10/00/01/11/10/00/00/00/00/01/11/11/11/11/10/00/00/01/11/11/10/00/00/01/11/1
chr2R14022173.AG.PASSAC=103GT1/11/10/01/11/10/00/01/10/00/00/00/01/11/10/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/01/11/11/11/10/00/00/01/10/01/10/01/11/11/10/00/01/11/00/01/11/10/01/11/10/01/10/00/01/11/10/00/00/00/11/10/01/10/00/01/11/11/11/11/11/10/00/00/00/01/11/11/10/00/00/01/10/00/01/11/10/01/10/01/11/10/01/10/01/11/10/00/11/11/11/11/11/10/00/00/11/11/11/11/11/11/11/11/11/10/01/10/00/01/10/01/11/10/01/10/01/10/00/00/00/00/01/10/01/11/11/11/11/10/01/11/10/00/00/00/00/00/01/10/00/00/00/00/01/11/11/11/10/00/00/00/01/10/00/01/10/01/11/10/01/10/00/00/01/11/10/00/01/11/10/00/00/00/00/01/11/11/11/11/10/00/00/01/11/11/10/00/00/01/11/1
chr2R14022290.TG.PASSAC=97GT1/11/10/01/11/10/00/01/10/00/00/00/01/10/00/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/00/01/10/01/10/00/00/01/10/01/10/01/11/11/10/00/00/00/00/00/01/10/01/11/10/01/10/00/01/01/10/00/00/00/11/10/01/10/00/01/11/11/11/11/11/10/00/00/00/01/11/11/10/00/00/01/10/00/01/11/10/01/10/01/11/10/01/10/01/11/10/00/11/11/11/11/11/10/00/00/11/11/11/11/11/11/11/11/11/10/01/10/00/01/10/01/11/10/01/10/01/10/00/01/00/00/01/10/01/11/11/11/11/10/01/11/10/00/00/00/00/00/01/10/00/00/00/00/01/10/01/11/10/00/00/00/01/10/00/01/10/01/11/10/01/10/00/00/01/11/10/00/01/11/10/00/00/00/00/01/11/11/11/11/10/00/00/01/11/11/10/00/00/01/11/1
chr2R14022314.ATATGTGTACCCATAAA,ATATGTGTACCTATAA,ATATGTGTGTACCATAA,ATATGTGTGTACCCATAA,ATATGTGTGTACCTATAA.PASSAC=11,23,9,2,81GT1/15/50/05/23/00/00/05/50/00/00/00/05/50/00/00/01/10/00/00/00/05/50/00/00/00/00/05/50/00/00/05/50/05/50/00/00/05/50/05/20/05/25/55/50/00/00/00/50/05/55/50/05/25/20/05/20/00/05/55/50/00/00/00/53/40/03/00/00/05/25/55/55/05/25/50/00/00/00/05/25/55/50/00/00/05/50/00/05/25/50/05/50/05/51/10/05/20/05/25/50/00/35/55/55/55/25/20/00/00/51/15/21/15/55/51/11/15/55/50/01/10/00/05/50/03/45/20/05/50/05/20/00/05/00/00/05/50/05/55/25/25/05/50/05/55/50/00/00/00/00/00/05/50/00/00/00/00/05/50/05/25/20/00/00/00/05/50/00/03/00/05/55/50/05/50/00/00/01/30/50/00/05/55/20/00/00/00/00/03/53/35/55/51/10/00/00/01/15/55/50/00/00/05/55/2

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R14022097TTAATGAAACCTCCGTCAAGTAAAATTGCTTCTGTTCGCAGCGTGACCAAT
chr2R14022151GTAAAAACCTATCGAACTAAAGTTCGCTGCTATATATACCATTGCTAGCTG
chr2R14022173TTCGCTGCTATATATACCATTGCTAGCTGTCTGCTTGGTCCTCTGGTTTTT
chr2R14022290TACTAAAAACTTATCAAATTCTGTTATTTGTTTTTAAAGCTAGTATTGATADmelanogaster-FlyFactorSurvey-sens_SANGER_10_FBgn0002573 , Dmelanogaster-FlyFactorSurvey-sens_SOLEXA_5_FBgn0002573 , Dmelanogaster-FlyFactorSurvey-sens.2_SANGER_2.5_FBgn0051632
chr2R14022314TATTTGTTTTTAAAGCTAGTATTGATATGTGTACCCATAACATTAATTGATNA