Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
153887994.37185198092313e-080.9992307282512780.7461368788986210.843391390666816
153890269.993460514282e-060.2619432307536680.1123103877618210.0515167994927344
153883806.12151544409696e-050.5227403625249310.7584559010146380.409918145927284
153890459.53844430972586e-050.5518245527535150.8759508796174630.862682309821259
154793950.0001742933657607870.1536104911973330.3581911919337340.497306296885694

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R15388799.CT.PASSAC=49GT0/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/01/10/00/00/00/01/10/00/00/01/11/10/00/00/00/00/01/10/00/01/11/10/00/00/01/10/00/00/00/00/11/10/00/00/00/00/00/00/01/10/00/00/00/00/01/11/10/00/00/00/00/01/11/11/00/01/10/00/01/11/10/00/00/00/00/01/10/00/00/00/01/10/01/10/00/01/11/10/00/00/00/00/00/01/10/01/10/00/00/00/01/11/10/00/00/00/01/10/01/10/01/11/10/00/00/00/00/00/00/00/00/01/10/00/01/10/01/10/01/11/11/10/01/11/10/1
chr2R15389023.TTTTT.PASSAC=37GT0/00/00/00/01/01/10/01/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/01/10/01/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/01/10/00/01/11/00/01/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/10/00/01/00/01/01/10/00/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/01/00/00/01/10/00/01/00/00/00/01/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/01/00/01/00/01/10/00/01/10/01/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/01/01/00/00/01/00/0
chr2R15389026.TTT.PASSAC=114GT0/00/11/11/00/00/00/00/00/00/00/11/11/10/01/11/11/10/11/01/10/01/00/00/01/10/01/11/01/01/11/00/10/01/11/01/00/10/01/10/01/11/01/11/11/00/01/11/10/00/01/10/01/01/01/00/10/00/00/00/01/01/01/01/01/11/00/01/11/11/01/01/11/00/00/00/00/00/01/01/00/01/01/01/01/00/01/11/00/00/00/01/01/01/10/01/00/00/00/00/00/00/10/00/00/00/00/01/01/00/10/01/01/11/10/11/11/10/00/01/10/01/00/01/10/00/00/10/00/01/00/00/01/00/01/00/00/01/00/00/00/11/01/01/01/00/01/00/00/01/10/01/10/00/01/01/00/00/01/00/01/00/01/00/01/00/01/10/00/01/00/00/01/00/10/01/11/10/00/01/10/00/01/11/11/01/01/01/00/00/11/00/01/01/10/01/10/01/10/00/00/01/01/10/00/0
chr2R15388380.GT.PASSAC=19GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/01/10/01/00/01/10/00/01/11/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/11/00/00/00/00/00/00/00/00/00/01/00/00/01/10/01/10/00/01/10/00/00/00/00/0
chr2R15389045.CCTATTTGTTTCCAAGCTCTACGGGAAGTTTCGATGGGGCTGGGAAGTAGATTTGTGTACTTGATATGGCC,CCTATTTGTTTCCAAGCTATACGGGAAGTTTCGATGGGGCTGGGAAGTAGATTTGAGTACTTGATATGGC,CCTATTTGTTTCCAAGCTATACGGGAAGTTTCGATGGGGCTGGGAAGTAGATTTGTGTACTTGATATGGC,CCTATTTGTTTCCAAGCTCTACGGGAAGTTTCGATGGGGCTGGGAAGTAGATTTGAGTACTTGATATGGC,CCTATTTGTTTCCAAGCTCTACGGGAATTTTCGATGGGGCTGGGAAGTAGATTTGTGTACTTGATATGGC,CCTATTTGTTTCCAAGCTCTACGGTAAGTTTCGATGGGGCTGGGAAGTAGATTTGAGTACTTGATATGGC.PASSAC=2,9,93,21,1,10GT0/03/33/36/60/00/04/40/00/04/43/33/33/30/03/32/22/23/30/03/30/06/60/00/03/30/03/33/33/33/30/03/34/43/33/30/03/34/43/30/03/33/33/33/36/61/13/33/30/00/03/30/03/33/33/33/34/40/00/00/03/36/60/06/33/30/04/43/33/33/33/03/36/60/00/00/00/00/03/33/00/03/33/30/06/60/03/33/30/00/00/03/33/33/30/03/30/00/04/44/40/04/24/44/40/04/44/43/33/30/30/03/33/33/33/33/33/33/30/03/30/03/30/03/34/40/03/04/43/33/33/30/03/30/33/30/00/03/34/40/00/02/22/23/33/34/46/64/40/03/30/03/30/00/03/33/34/40/03/30/03/30/03/30/06/60/03/30/01/12/20/04/46/63/34/43/33/30/00/03/30/00/02/23/33/33/33/33/30/05/33/30/03/32/20/02/20/03/30/00/00/03/33/30/00/0
chr2R15479395.CA.PASSAC=32GT0/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/01/10/00/10/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/10/01/10/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/01/10/00/01/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/10/00/01/10/00/00/00/10/00/00/00/00/01/11/11/10/01/01/10/00/00/00/00/00/00/00/00/00/00/00/10/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R15388799GTCTGCTACTCGGAGATGAACACTCAGCACAAGGGTTCGGATTTAAACTGA
chr2R15389023TCATTGTTTTGGTTTTGCCTTTTTTTTTGTCATTTCCACACACAAGCCTATNA
chr2R15389026TTGTTTTGGTTTTGCCTTTTTTTTTGTCATTTCCACACACAAGCCTATTTGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2R15388380TCTTAACAACTGGAGGCGGAGGAGGAGCATCAAAAGTTAGTTATACATTGT
chr2R15389045TTTTTTGTCATTTCCACACACAAGCCTATTTGTTTCCAAGCTCTACGGGAANA
chr2R15479395GCTTTCGGGTTTCATCATCATCTGCCTGGCGAGTTTATGAACCATTTTCAC