Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
161961764.99432582186761e-120.5048811350540320.03620742822555850.00573480697245805
161963082.70207980935598e-110.5549311057153380.04638785110805740.0154945594852936
161962714.29892752760275e-110.7455165354444090.02375006354439120.0138848789413087
161963524.29892752760275e-110.7455165354444090.02375006354439120.0138848789413087
161962771.64567465203836e-100.7350177531184360.1630047359010270.0610492680890658

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R16196176.TG.PASSAC=72GT0/00/00/00/00/01/11/10/01/10/00/01/11/10/00/01/10/00/01/11/10/00/00/00/00/00/00/01/11/11/11/10/01/10/00/00/00/00/01/11/10/01/10/00/00/00/00/00/00/00/00/01/11/10/00/00/00/01/11/11/10/01/11/10/10/00/00/00/01/11/10/00/10/00/00/00/00/01/10/01/10/00/01/10/01/11/10/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/01/11/10/00/00/01/10/00/01/10/00/00/00/00/01/11/10/01/10/01/11/10/00/00/01/00/01/11/10/01/10/00/11/10/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/10/00/00/01/10/01/10/00/01/10/01/11/11/10/01/11/11/10/00/00/00/00/01/11/10/00/00/00/01/00/00/00/01/11/10/00/00/00/00/00/01/11/10/00/00/00/00/00/01/10/00/00/01/10/0
chr2R16196306.AGAAAA,CAT,GTCTTACAAA,GTCTTACAAAAA,GTCTTACAAAGA,GTCTTACAGA,GTCTTACGAA,GTCTTACGTCTTACA.PASSAC=11,1,16,6,69,1,27,1GT0/00/07/70/00/05/55/50/05/00/00/05/55/80/07/75/50/00/05/55/50/00/07/10/00/00/00/05/55/55/55/50/05/50/00/00/00/00/05/53/40/05/00/00/00/00/03/37/00/00/03/15/55/50/07/70/00/05/55/55/50/05/55/50/50/03/40/07/70/05/50/75/70/03/10/07/70/05/50/05/50/03/45/00/05/05/50/00/07/05/07/00/07/70/00/05/57/30/05/50/07/17/05/55/50/00/00/05/57/07/05/50/07/00/00/07/75/55/53/15/50/03/15/50/00/00/07/50/05/05/57/15/50/07/55/50/00/00/00/00/05/15/00/00/00/00/05/50/00/00/05/54/60/00/05/53/45/53/13/35/50/05/05/55/50/05/55/55/57/70/00/00/00/05/05/57/70/00/00/05/73/13/10/05/05/00/07/70/03/40/70/05/55/50/00/00/00/00/02/25/50/03/30/05/50/0
chr2R16196308.AGAAA,AAAA,AAAGA.PASSAC=69,2,1GT0/00/00/00/00/01/11/10/01/10/00/01/11/30/00/01/10/00/01/11/10/00/00/00/00/00/00/01/11/11/11/10/01/10/00/00/00/00/01/10/00/01/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/01/11/11/10/01/11/10/10/00/00/00/00/01/10/01/00/00/00/00/00/01/10/01/10/00/01/10/01/01/10/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/01/11/10/00/00/01/10/00/01/10/00/00/00/00/01/11/10/01/10/00/01/10/00/00/00/10/01/11/10/01/10/00/11/10/00/00/00/00/01/21/10/00/00/00/01/10/00/00/01/10/00/00/01/10/01/10/00/01/10/01/21/11/10/01/11/11/10/00/00/00/00/01/01/10/00/00/00/01/00/00/00/01/01/00/00/00/00/00/00/01/11/10/00/00/00/00/00/01/10/00/00/01/10/0
chr2R16196271.GA.PASSAC=83GT0/00/00/00/00/01/11/10/01/10/00/01/11/10/00/01/10/00/01/11/10/00/00/00/00/00/00/01/11/11/11/10/01/10/00/00/00/00/01/11/10/01/10/00/00/00/01/10/00/00/01/11/11/10/00/00/00/01/11/11/10/00/01/10/10/01/10/00/00/01/10/00/10/01/10/00/00/01/10/01/10/01/11/10/01/11/10/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/01/11/10/00/00/01/10/00/01/10/00/00/00/00/01/11/11/11/10/01/11/10/00/00/00/10/01/11/10/01/10/00/01/10/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/11/10/00/01/11/11/11/11/11/10/01/11/11/10/01/11/11/10/00/00/00/00/01/11/10/00/00/00/01/01/11/10/01/11/10/00/00/01/10/00/01/11/10/00/00/00/00/00/01/10/01/10/01/10/0
chr2R16196352.AT.PASSAC=83GT0/00/00/00/00/01/11/10/01/10/00/00/01/10/00/01/10/00/01/11/10/00/00/00/00/00/00/01/11/11/11/10/01/10/00/00/00/00/01/11/10/01/10/00/00/00/01/10/00/00/01/10/01/10/00/00/00/01/11/11/10/01/11/11/00/01/10/00/00/01/10/01/00/01/10/00/00/01/10/01/10/01/11/10/01/11/10/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/01/11/10/00/00/01/10/00/01/10/00/00/00/00/01/11/11/11/10/01/11/10/00/00/00/10/01/11/10/01/10/00/11/10/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/11/10/00/01/11/11/11/11/11/10/01/11/11/10/01/11/11/10/00/00/00/00/01/11/10/00/00/00/01/01/11/10/01/11/10/00/00/01/10/00/01/11/10/00/00/00/00/00/01/10/01/10/01/10/0
chr2R16196277.TA.PASSAC=108GT0/00/01/10/00/01/11/10/01/10/00/01/11/10/01/11/10/00/01/11/10/00/01/10/00/00/00/01/11/11/11/10/01/10/00/00/00/00/01/11/10/01/10/00/00/00/01/11/00/00/01/11/11/10/01/10/00/01/11/11/10/00/01/10/10/01/10/01/10/01/10/11/10/01/10/01/10/01/10/01/10/01/11/10/01/11/10/00/01/11/11/10/01/10/00/01/11/10/01/10/01/11/01/11/10/00/00/01/11/10/11/10/01/10/00/01/11/11/11/11/10/01/11/10/00/00/01/10/01/11/11/11/10/01/11/10/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/11/10/00/01/11/11/11/11/11/10/01/11/11/10/01/11/11/11/10/00/00/00/01/11/11/10/00/00/01/11/11/10/01/11/10/01/10/01/10/10/01/11/10/00/00/00/00/01/11/10/01/10/01/10/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R16196176CGATGGCACCAGGGCTGCACTTTCTCTGTTTCAAAATATCGATTGTTGATGDmelanogaster-FlyFactorSurvey-Blimp.1_NAR_FBgn0035625 , Dmelanogaster-FlyFactorSurvey-ken_SANGER_10_FBgn0011236 , Dmelanogaster-FlyFactorSurvey-ken_SOLEXA_5_FBgn0011236
chr2R16196306TTTTTAAACAAATGTTTTTATTACAGAGAAACAGAGTTTGCGTGTGCAAAANA
chr2R16196308TTTAAACAAATGTTTTTATTACAGAGAAACAGAGTTTGCGTGTGCAAAAAANA
chr2R16196271TCCTTATTCATTTGTAAATCATAAGAAACCTGAGGTTTTTAAACAAATGTTDmelanogaster-JASPAR_2014-CAD-MA0216.2
chr2R16196352CAAAAAATACCTAAATGTTGAGCTAAGCTTATTAACAGTAACATGTCTATT
chr2R16196277TTCATTTGTAAATCATAAGAAACCTGAGGTTTTTAAACAAATGTTTTTATT