Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
165110778.23741716399417e-150.9209236991091120.5806727087648850.545196109342717
165108674.07458389125113e-100.7103388552483930.9450366645597990.548979920274542
165110922.647082888691e-090.1751480438575350.2258436597461290.43312528811945
165107581.31179212049354e-080.9524084183063960.5698567474149130.31985734983885
165107185.68374526307867e-080.7789345630140390.7150800205976010.154564303259608

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R16511077.AG.PASSAC=97GT1/11/10/01/11/11/10/01/10/01/11/10/00/01/11/10/01/10/00/01/11/10/01/11/11/10/00/00/01/11/11/10/01/11/10/01/10/00/01/10/00/00/00/00/00/00/00/01/10/01/11/10/00/00/11/11/10/00/00/00/01/10/00/00/00/01/11/11/11/10/01/11/00/00/00/00/01/11/10/01/10/00/00/00/01/11/10/01/10/01/10/01/11/10/01/11/10/00/01/10/00/01/11/11/11/11/10/01/11/10/10/00/00/00/00/00/00/00/01/11/10/01/11/10/01/10/01/10/01/10/01/10/00/00/11/10/00/01/10/00/01/11/11/11/10/01/11/10/00/01/11/10/00/00/01/10/00/00/01/11/11/10/01/10/01/10/00/01/10/01/11/10/01/10/00/00/00/00/00/00/10/00/00/00/00/01/10/01/10/00/11/11/10/00/01/10/01/11/10/01/11/10/00/01/10/0
chr2R16510867.CG.PASSAC=111GT1/11/10/01/11/11/10/01/10/01/11/10/01/11/11/10/01/11/11/11/11/10/01/11/11/10/00/00/01/11/11/10/01/11/11/11/10/00/01/10/00/00/00/00/00/00/00/01/10/01/11/11/10/01/01/10/00/00/00/00/01/10/01/10/00/01/11/11/11/10/01/11/00/00/00/00/01/11/11/11/10/00/00/01/11/11/10/01/10/01/11/11/11/10/01/11/10/01/11/10/00/01/11/11/11/11/10/01/11/11/00/01/10/00/01/10/00/00/01/11/10/01/11/10/01/11/11/11/11/10/01/10/00/01/01/10/00/01/10/00/01/11/10/01/11/11/11/10/00/01/11/10/00/00/01/10/00/00/01/11/11/10/01/10/01/10/00/01/10/00/01/10/01/10/01/10/00/00/00/00/10/00/00/00/00/01/10/01/11/10/11/11/10/00/01/10/01/11/10/01/11/10/00/01/10/0
chr2R16511092.CT.PASSAC=4GT1/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/0
chr2R16511092.CTGACTTC,CTGATTC,CTGATTT.PASSAC=2,124,3GT2/22/20/02/22/22/20/02/22/22/22/22/20/02/22/20/02/20/00/02/22/20/02/22/22/20/00/00/02/22/22/20/02/22/22/22/20/00/02/20/02/20/02/22/20/00/00/02/20/02/22/20/00/00/22/22/20/02/20/00/02/20/00/02/32/22/22/22/22/20/02/22/00/02/22/20/02/22/20/02/22/20/02/20/02/22/20/02/20/02/20/02/22/22/22/22/20/00/02/20/00/02/22/22/22/22/22/22/22/22/00/00/00/00/00/00/00/02/22/22/20/02/22/20/02/20/02/10/02/20/02/20/02/20/12/22/22/22/20/00/02/22/22/22/20/02/22/20/00/02/22/20/00/02/22/20/00/00/02/22/22/20/02/30/02/20/00/02/22/22/32/20/02/20/00/00/02/20/00/02/20/00/00/00/02/22/20/02/20/00/22/22/20/02/22/22/22/22/20/02/22/22/22/22/22/2
chr2R16510758.CG.PASSAC=125GT1/11/10/01/11/11/10/01/10/01/11/10/01/11/11/10/00/01/11/11/11/10/01/11/11/10/00/00/01/11/11/10/01/11/11/11/10/01/11/10/00/00/00/00/01/10/00/01/10/01/11/11/11/11/01/10/00/00/01/11/11/10/01/10/00/01/11/11/11/10/00/00/10/00/00/00/01/11/11/11/10/00/00/01/11/11/10/01/11/11/11/11/11/10/01/11/10/01/11/10/00/01/11/11/11/11/10/01/11/10/10/01/10/01/11/10/00/00/01/11/10/01/11/10/01/11/01/11/11/10/01/10/00/01/01/10/00/01/11/10/11/11/10/01/11/11/11/10/00/01/11/10/00/00/01/10/01/10/01/11/11/11/11/10/01/10/00/01/10/00/01/11/11/11/11/10/00/00/00/00/10/00/00/00/10/01/10/01/11/11/01/11/11/10/01/10/11/11/10/01/11/10/00/01/10/0
chr2R16510718.TC.PASSAC=114GT1/11/10/01/11/10/00/01/10/01/11/10/01/11/10/00/01/11/11/11/11/10/01/11/11/10/00/00/01/11/11/10/01/11/11/11/10/01/11/10/00/00/00/00/01/10/00/01/10/01/11/11/11/11/00/00/00/00/01/11/11/10/01/10/00/01/11/10/11/10/00/00/00/00/00/00/01/11/11/11/10/00/00/01/11/11/10/01/11/11/11/11/10/00/01/11/10/01/11/10/00/01/11/11/11/11/10/01/10/00/10/01/10/01/11/10/00/00/01/10/00/01/11/10/01/11/10/11/11/10/01/10/00/00/01/10/00/01/11/10/01/11/10/01/11/11/11/10/00/01/11/10/00/00/01/10/01/10/01/11/11/11/11/10/01/10/00/01/11/10/01/11/11/11/11/10/00/00/00/00/00/00/00/00/10/01/10/01/11/10/01/11/11/10/01/10/01/10/00/01/11/10/00/01/10/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R16511077AGTTTGTTGTTGTTGCTCTTAATTAGTTGTTATTATTTTCTGACTTGCGAGDmelanogaster-FlyFactorSurvey-BH2_Cell_FBgn0004854 , Dmelanogaster-FlyFactorSurvey-CG11085_Cell_FBgn0030408 , Dmelanogaster-FlyFactorSurvey-CG33980_SOLEXA_2_0_FBgn0053980 , Dmelanogaster-FlyFactorSurvey-CG7745_SANGER_5_FBgn0033616 , Dmelanogaster-FlyFactorSurvey-Dr_Cell_FBgn0000492 , Dmelanogaster-FlyFactorSurvey-Unc4_Cell_FBgn0024184
chr2R16510867TAAATGTAAATTGCGGATAACTAACAAAGATACAATTCGTAAATTGCGAAC
chr2R16511092CTCTTAATTAGTTGTTATTATTTTCTGACTTGCGAGCTTGCAGTCGACTGA
chr2R16511092CTCTTAATTAGTTGTTATTATTTTCTGACTTGCGAGCTTGCAGTCGACTGANA
chr2R16510758ACCTTCATAGAGAGCCTTGCCGCGCGGACACAAGTTGTACTTTTTGCGCCG
chr2R16510718GAATTTACGATTTACCAGTCACATTTGGAGTTTAATGCTCACCTTCATAGADmelanogaster-FlyFactorSurvey-tap_da_SANGER_5_2_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-tap_da_SANGER_5_2_FBgn0015550