Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
180255685.18675744083881e-070.6145547994595040.2419048492131430.0897093844904538
180259774.54645301330073e-060.9507568572264120.3223456117991460.485361401768708
180260115.10690275805536e-060.9657014900239140.1335123652938130.219836499108574
180259951.01202962910514e-050.9730444404152530.3324110365342320.432640759869097
180271233.27240184007454e-050.6365819196016080.8478844267067940.314677351373203

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R18025568.AG.PASSAC=58GT1/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/01/10/01/10/00/01/11/11/10/01/10/00/00/01/10/01/10/00/00/01/11/10/00/01/10/00/00/00/01/10/01/10/01/11/11/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/11/10/00/01/10/01/10/01/10/00/00/01/11/10/01/10/00/00/01/11/11/10/00/00/01/10/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/11/10/00/01/11/10/01/10/01/11/10/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/01/10/01/10/00/00/00/01/10/00/01/10/01/01/10/00/00/00/01/10/00/00/01/01/10/00/00/01/10/00/01/10/00/00/00/00/00/01/1
chr2R18025977.GT.PASSAC=122GT0/01/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/10/00/00/01/10/01/10/01/10/01/11/10/00/01/11/10/01/11/10/00/00/00/01/11/11/10/00/01/10/10/00/00/01/11/10/01/10/01/10/00/00/01/11/10/01/01/11/11/11/11/11/11/11/11/10/01/10/01/11/11/11/01/01/11/11/11/10/00/01/11/10/01/10/01/10/00/01/10/00/00/00/00/01/11/11/10/00/00/01/11/11/00/01/11/11/10/00/01/11/10/01/10/01/11/10/01/11/11/10/01/10/01/11/11/11/11/10/00/01/11/10/00/01/10/01/10/01/01/11/10/00/01/10/01/10/00/01/00/01/11/10/01/11/11/11/11/11/10/00/01/10/01/11/11/11/10/01/11/10/01/10/10/01/10/00/00/01/10/00/01/10/11/11/10/01/10/01/10/00/01/10/00/01/11/11/10/0
chr2R18026011.AG.PASSAC=120GT0/01/10/01/11/11/11/11/11/11/11/11/10/01/11/10/01/10/01/10/00/00/01/10/01/10/01/10/01/11/10/00/01/11/10/01/11/10/00/00/00/01/11/11/10/00/01/10/10/00/00/01/11/10/01/10/01/10/00/00/01/11/10/01/01/11/11/11/11/10/01/11/01/10/01/10/01/11/11/11/00/11/11/11/11/10/00/01/11/10/01/10/01/10/00/01/10/00/00/00/00/01/11/11/10/00/00/01/11/11/00/01/11/11/10/00/01/11/10/01/10/01/11/10/01/11/11/10/01/10/01/11/11/11/11/10/00/01/11/10/00/01/10/01/10/01/11/11/10/00/01/10/01/10/00/01/00/01/11/10/01/11/11/11/11/11/10/00/01/10/01/11/11/11/10/01/11/10/01/10/10/01/10/00/00/01/10/00/01/10/11/11/10/01/10/01/10/00/01/10/00/01/10/11/10/0
chr2R18025995.CT.PASSAC=122GT0/01/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/10/00/00/01/10/01/10/01/10/01/11/10/00/01/11/10/01/11/10/00/00/00/01/11/11/10/00/01/10/10/00/00/01/11/10/01/10/01/10/00/00/01/11/10/01/01/11/11/11/11/11/11/11/11/10/01/10/01/11/11/11/01/01/11/11/11/10/00/01/11/10/01/10/01/10/00/01/10/00/00/00/00/01/11/11/10/00/00/01/11/11/00/01/11/11/10/00/01/11/10/01/10/01/11/10/01/11/11/10/01/10/01/11/11/11/11/10/00/01/11/10/00/01/10/01/10/01/11/11/10/00/01/10/01/10/00/01/00/01/11/10/01/11/11/11/11/11/10/00/01/10/01/11/11/11/10/01/11/10/01/10/10/01/10/00/00/01/10/00/01/10/11/11/10/01/10/01/10/00/01/10/00/01/11/11/10/0
chr2R18027123.CGTAGGTCACTCTGGGTG.PASSAC=64GT1/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/11/00/01/10/00/01/11/11/10/01/10/00/01/01/11/10/00/00/00/00/01/10/00/01/10/00/00/00/00/01/10/01/11/11/10/01/10/01/11/00/00/00/00/00/01/11/01/00/00/00/01/10/00/01/10/00/00/00/00/00/01/11/10/00/01/10/00/00/01/11/01/10/01/10/00/01/01/01/11/11/00/11/10/00/00/01/10/00/00/01/10/00/00/01/10/00/00/10/00/00/00/00/00/00/01/11/00/10/00/00/00/01/10/00/00/00/00/01/10/01/11/00/00/01/10/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/01/10/01/10/00/01/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/00/01/00/01/0
chr2R18027123.CCTGGGTCACTCTGGGTG,CTGGGTCACTCTGGGTGCCC,CTGGGTCACTCTGGGTGCCCC,CTGGGTCACTCTGGGTGCCCCC.PASSAC=10,7,17,122GT0/04/00/04/04/04/44/04/00/04/41/04/30/01/10/34/04/04/04/44/00/04/40/44/00/00/04/40/00/44/00/00/00/04/20/04/44/30/00/00/04/00/44/44/40/00/04/00/00/04/30/44/00/44/00/00/40/00/00/04/00/04/40/00/04/04/00/00/44/00/00/40/42/40/01/10/04/04/00/04/00/44/04/01/00/40/00/04/04/00/04/04/30/40/00/00/00/30/01/02/40/00/40/00/00/00/10/04/04/04/30/04/04/04/30/04/04/04/30/04/04/00/44/04/44/34/00/30/00/40/00/01/00/41/43/44/00/04/24/04/00/40/40/04/30/00/44/04/00/00/04/04/00/00/00/04/00/00/44/34/04/04/04/01/40/44/04/44/01/10/40/44/34/30/24/44/44/40/04/40/20/04/00/04/00/00/00/00/44/04/30/04/44/04/40/04/00/04/04/04/20/04/40/40/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R18025568AATAAAGGAAACGTTAGTAAAACAACAGAGTGTAAAAAAGGTTTAGCAACC
chr2R18025977TTTGAAATATCAAATATATTGCAGGTCTTCGTTCTGCATAAGCTTGATGTT
chr2R18026011TGCATAAGCTTGATGTTCTGAAGTATATTGTATACATCGTTTTTTTGACGT
chr2R18025995TTGCAGGTCTTCGTTCTGCATAAGCTTGATGTTCTGAAGTATATTGTATAC
chr2R18027123TGTGGGTTCCCAGTTCTGGCTATTCCCCCCCCTTTCACCTCTATACCGTAGDmelanogaster-FlyFactorSurvey-CG7368_SANGER_5_FBgn0036179 , Dmelanogaster-FlyFactorSurvey-crol_F7.16_SANGER_5_FBgn0020309 , Dmelanogaster-FlyFactorSurvey-lola.PD_SANGER_5_FBgn0005630
chr2R18027123TGTGGGTTCCCAGTTCTGGCTATTCCCCCCCCTTTCACCTCTATACCGTAGDmelanogaster-FlyFactorSurvey-CG7368_SANGER_5_FBgn0036179 , Dmelanogaster-FlyFactorSurvey-crol_F7.16_SANGER_5_FBgn0020309 , Dmelanogaster-FlyFactorSurvey-lola.PD_SANGER_5_FBgn0005630