Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
187702112.80589068019864e-120.9217594128071530.0771525556937640.0554077890410138
187695398.41870230542735e-110.8742989691585940.01787927797024820.0523096398568718
187690194.90850149839136e-100.7199614916840740.1304804173482370.0514002300934447
187690087.3097381389496e-100.2220932226398670.1111341112114610.0463053456687616
187694831.54094206565735e-090.3161913295204550.09838892556973180.0433408751683639

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R18770211.TC.PASSAC=137GT0/00/00/01/11/11/11/11/10/01/10/01/11/11/10/00/01/11/11/11/11/10/00/00/01/11/10/00/01/11/10/01/10/01/11/11/11/11/11/11/10/01/10/01/10/01/11/10/10/00/01/10/00/00/10/01/11/11/10/01/10/00/01/10/10/01/10/00/11/11/10/11/10/01/10/01/01/11/10/00/01/11/10/00/01/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/10/00/01/11/10/01/10/10/01/11/11/11/11/10/01/11/11/10/01/11/11/10/01/11/11/01/11/11/10/00/01/10/01/11/10/01/10/01/11/11/11/10/00/01/11/11/10/00/01/11/11/11/10/01/11/11/11/11/10/01/11/11/10/00/11/11/11/11/10/01/10/01/11/10/01/10/01/10/10/01/10/01/10/00/00/00/01/10/10/00/01/11/11/11/11/11/11/10/01/10/01/10/01/1
chr2R18769539.TA,G.PASSAC=3,136GT0/00/00/02/22/22/22/22/20/02/20/02/22/22/20/00/02/22/22/22/22/20/02/22/22/20/00/02/22/22/22/22/20/02/22/22/22/22/22/22/20/02/20/02/20/02/22/20/20/00/02/20/00/00/20/02/22/22/20/02/20/00/02/20/20/02/20/02/02/22/20/22/00/02/20/02/02/22/20/00/02/22/20/00/02/21/11/12/22/22/22/22/22/22/22/22/22/20/02/22/22/22/20/00/02/22/20/02/20/20/02/22/22/22/22/22/22/22/22/20/02/22/22/20/02/22/22/02/22/22/20/00/02/20/02/22/20/02/20/02/22/22/22/20/00/02/22/22/20/00/02/22/22/22/20/02/22/22/22/22/20/02/22/22/20/00/22/22/22/22/20/00/00/02/20/00/02/20/02/20/20/02/20/02/20/00/00/00/02/20/20/00/02/22/22/22/22/22/22/20/02/20/02/20/01/1
chr2R18769019.GA.PASSAC=69GT0/00/00/01/11/10/01/10/00/01/10/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/10/01/11/10/00/01/10/00/01/10/00/01/11/10/00/00/00/00/00/00/00/01/01/10/00/00/00/01/10/00/00/00/00/00/01/10/01/10/00/01/11/10/01/10/00/00/01/11/10/00/00/00/00/00/00/00/01/11/11/10/01/10/01/10/01/10/01/11/10/00/00/01/10/10/00/10/00/00/01/10/00/01/10/00/00/01/11/11/10/00/00/01/10/00/00/00/00/01/10/01/10/01/11/10/00/01/10/01/11/11/10/00/11/11/11/11/10/00/00/00/00/00/01/10/01/10/00/00/00/01/10/00/00/00/00/00/00/00/01/11/11/11/10/01/10/00/01/10/01/10/10/0
chr2R18769006.AAAA.PASSAC=16GT0/00/00/00/00/00/00/01/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/01/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2R18769008.AAA.PASSAC=87GT0/00/00/01/01/00/01/10/00/01/10/00/00/00/00/01/00/00/01/11/11/10/00/00/11/11/00/00/00/01/10/00/00/00/01/00/01/10/00/01/10/00/00/01/10/00/00/00/01/00/00/00/00/00/10/01/01/10/00/01/10/00/01/10/00/01/11/10/00/01/11/00/11/00/00/01/01/11/10/00/00/01/10/00/00/01/01/10/01/00/01/10/00/01/11/10/01/00/00/00/01/01/10/00/00/00/00/00/10/00/01/11/01/10/01/10/01/10/01/10/11/11/00/00/00/01/10/11/00/00/00/00/01/00/00/01/00/01/10/01/01/00/10/00/00/01/10/00/00/00/00/01/10/01/00/01/11/10/01/01/10/01/11/11/10/00/11/11/11/11/00/00/00/00/00/00/01/10/01/10/00/00/00/01/00/00/00/00/00/00/00/00/01/11/11/11/11/01/10/00/01/00/01/10/01/0
chr2R18769483.AG.PASSAC=68GT0/00/00/01/11/10/01/10/00/01/10/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/00/00/00/01/10/00/00/00/01/10/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/10/01/11/10/00/01/10/00/01/10/00/01/11/10/00/00/00/00/00/00/00/01/01/10/00/00/00/01/10/00/00/00/00/00/01/10/01/10/00/01/11/10/01/10/00/00/01/11/10/00/00/00/00/00/00/00/01/11/11/10/01/10/01/10/01/10/01/11/10/00/00/01/11/00/00/00/00/00/01/10/00/01/10/00/00/01/11/11/10/00/00/01/10/00/00/00/00/01/10/01/10/01/11/10/00/01/10/01/11/11/10/00/11/11/11/11/10/00/00/00/00/00/01/10/01/10/00/00/00/01/10/00/00/00/00/00/00/00/01/11/11/11/10/01/10/00/01/10/01/10/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R18770211TAGAAAGTGTGACCGCGACGCAGCTGTTCAAATATACCGCAAACGTCAAATDmelanogaster-FlyFactorSurvey-Adf1_FlyReg_FBgn0000054 , Dmelanogaster-FlyFactorSurvey-da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-sage_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-sage_da_SANGER_5_FBgn0037672 , Dmelanogaster-FlyFactorSurvey-Side_SANGER_5_FBgn0032741
chr2R18769539TATCGGCTTTTAAATTTAATTCAGTCTTCACAACTTCAATGCTTTAAGACT
chr2R18769019AGACTAAAAAAAAAACGTACGTTTGAAACGGACGACTAGTACAGTTTCTGC
chr2R18769006ATGCGATTTTGCTAGACTAAAAAAAAAACGTACGTTTGAAACGGACGACTANA
chr2R18769008GCGATTTTGCTAGACTAAAAAAAAAACGTACGTTTGAAACGGACGACTAGTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr2R18769483AATGTATTATTATCGTTATTTTATAAAATGTTTTAATTTAAACAATGGTAC