Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
204620445.37642794923348e-120.4023182535344030.7119158427024440.904235845004013
204620615.82585432865438e-120.4845193426052590.6619210763139850.758178733438488
204626659.59361177638364e-120.7696886862961450.701609113659060.909348356332657
204635936.48607810288282e-110.4866334580810370.5704751851763650.994344559230652
204635946.48607810288282e-110.4866334580810370.5704751851763650.994344559230652

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R20462044.TTT.PASSAC=120GT0/01/11/11/11/00/00/01/10/01/11/01/11/11/10/01/10/00/01/10/01/10/00/00/01/10/01/11/10/01/10/01/10/01/11/11/11/10/00/01/00/00/00/01/11/10/01/10/11/11/10/00/00/01/01/10/01/00/00/00/00/01/11/10/10/00/01/11/01/10/01/10/11/11/01/10/01/11/11/11/11/00/00/01/00/01/10/00/00/00/00/00/01/01/11/11/11/01/10/01/10/11/11/11/11/01/11/10/01/11/10/00/00/00/01/11/11/10/01/01/10/00/00/01/11/10/01/01/01/10/01/01/10/00/01/11/11/11/10/01/00/01/01/11/11/11/11/11/10/00/01/11/10/00/00/01/10/01/00/00/01/10/01/11/11/11/10/00/01/11/01/00/00/01/11/11/10/00/00/01/01/11/10/01/00/01/01/11/01/11/11/10/01/10/01/10/00/01/10/01/10/00/00/00/01/0
chr2R20462061.GC.PASSAC=122GT0/01/11/11/11/10/01/11/10/01/11/11/10/11/10/01/10/00/01/10/01/10/00/00/01/10/01/11/10/01/10/01/10/01/11/11/11/10/01/11/10/00/00/01/11/10/01/11/01/10/10/00/00/00/01/10/01/10/00/00/00/01/11/00/10/00/01/11/11/10/01/10/11/11/11/10/01/11/11/11/11/10/00/01/10/01/10/00/00/00/00/00/01/01/11/11/11/11/10/01/11/11/11/11/10/01/11/10/01/11/10/00/01/10/01/11/11/11/11/11/10/00/00/01/11/10/01/01/11/10/01/11/10/00/01/11/11/11/10/01/10/01/01/11/11/11/11/11/10/00/01/11/10/00/00/01/00/01/10/00/01/10/00/01/11/11/10/00/01/11/01/10/00/01/11/11/10/00/00/01/11/11/10/01/10/01/11/11/01/11/11/10/01/10/01/10/00/01/10/01/11/10/00/00/01/1
chr2R20462061.GGC.PASSAC=8GT0/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2R20462665.CT.PASSAC=125GT0/01/11/11/11/10/00/01/10/01/11/11/11/11/10/01/10/00/01/10/01/10/00/00/01/10/01/11/10/01/10/01/10/01/11/11/11/10/01/11/10/00/01/11/11/10/01/11/01/11/10/00/00/01/01/10/01/10/00/01/10/01/11/10/10/00/01/11/11/10/01/11/01/11/11/10/01/11/11/11/11/10/00/01/10/01/11/10/00/00/00/00/00/11/11/11/11/11/10/01/10/01/11/11/11/11/11/10/01/11/10/01/10/00/01/11/11/10/01/11/10/00/00/01/11/10/01/11/11/10/01/11/10/00/11/11/11/11/10/01/10/01/11/11/11/11/11/11/10/00/01/11/10/00/00/01/10/01/10/00/01/10/01/11/11/11/10/00/01/11/11/10/00/01/11/11/10/00/00/01/11/11/10/01/10/01/11/11/01/11/11/10/01/10/01/10/00/01/10/01/10/00/00/00/01/1
chr2R20463593.GA.PASSAC=119GT0/01/11/11/11/10/00/01/10/01/11/11/11/11/10/01/10/00/01/10/01/10/00/00/01/10/01/10/00/01/10/01/10/01/11/11/11/10/01/11/10/00/01/11/11/10/01/11/01/11/10/00/00/01/01/10/01/10/00/01/10/11/11/10/10/00/01/11/11/10/01/11/01/11/11/10/01/11/11/11/11/10/00/01/10/01/10/00/00/00/00/00/01/11/11/11/11/11/10/01/10/01/11/11/11/11/11/10/01/11/10/00/00/00/01/11/11/10/01/11/10/00/00/01/11/10/01/11/11/10/01/11/10/00/11/11/11/11/10/00/00/01/11/11/11/11/11/11/10/00/01/11/10/00/00/01/10/01/10/00/01/10/01/11/11/11/10/00/01/11/11/10/00/01/11/11/10/00/00/01/10/01/10/00/00/01/11/11/01/11/11/10/00/00/01/10/00/01/10/01/10/00/00/00/01/1
chr2R20463594.GA.PASSAC=119GT0/01/11/11/11/10/00/01/10/01/11/11/11/11/10/01/10/00/01/10/01/10/00/00/01/10/01/10/00/01/10/01/10/01/11/11/11/10/01/11/10/00/01/11/11/10/01/11/01/11/10/00/00/01/01/10/01/10/00/01/10/11/11/10/10/00/01/11/11/10/01/11/01/11/11/10/01/11/11/11/11/10/00/01/10/01/10/00/00/00/00/00/01/11/11/11/11/11/10/01/10/01/11/11/11/11/11/10/01/11/10/00/00/00/01/11/11/10/01/11/10/00/00/01/11/10/01/11/11/10/01/11/10/00/11/11/11/11/10/00/00/01/11/11/11/11/11/11/10/00/01/11/10/00/00/01/10/01/10/00/01/10/01/11/11/11/10/00/01/11/11/10/00/01/11/11/10/00/00/01/10/01/10/00/00/01/11/11/01/11/11/10/00/00/01/10/00/01/10/01/10/00/00/00/01/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R20462044CGCAAAGAATTTTGGTATTTTTTTTTAACTCGGTTTTTTTGGTGTTTTCCCDmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr2R20462061TTTTTTTTTAACTCGGTTTTTTTGGTGTTTTCCCAGCCCGGCACACTAAACDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG4360_F1.3_SANGER_2.5_FBgn0038787 , Dmelanogaster-FlyFactorSurvey-dl_FlyReg_FBgn0000462 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768 , Dmelanogaster-JASPAR_2014-pan-MA0237.2 , Dmelanogaster-JASPAR_CORE-dl_1-MA0022.1
chr2R20462061TTTTTTTTTAACTCGGTTTTTTTGGTGTTTTCCCAGCCCGGCACACTAAACDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-dl_FlyReg_FBgn0000462 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768 , Dmelanogaster-JASPAR_2014-pan-MA0237.2 , Dmelanogaster-JASPAR_CORE-dl_1-MA0022.1
chr2R20462665GCCCAAGCCATAACGATCTCCCACCGACTTCAGCACGGGCACATTCCATAA
chr2R20463593CCAGAATAAGAAAGTGAATCTAGTGGAAATATAAAATGAAGCACAATTGAT
chr2R20463594CAGAATAAGAAAGTGAATCTAGTGGAAATATAAAATGAAGCACAATTGATT