Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
61396042.06712959442876e-100.09553433568723130.9723161349185380.0847168815821356
61395426.48220346955306e-100.048411619339520.9314689133884240.0216495777450189
61399741.74442420468936e-080.4876185284551320.9960526369220730.262059361318014
61395591.86066342377951e-080.01016409712872730.6797750785402480.0401454660449251
61395772.49816717804329e-080.06979818320465840.4301886799641610.0112790544068208

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R6139604.CT.PASSAC=47GT0/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/11/10/01/11/11/10/00/00/00/00/00/01/10/00/00/10/00/01/10/00/10/10/01/10/01/10/00/00/00/00/01/11/10/00/00/01/11/00/01/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/01/11/10/00/00/00/00/01/11/10/00/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/00/00/01/10/00/01/10/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/01/00/00/00/00/00/00/01/10/00/00/00/01/10/00/01/10/00/00/00/00/01/11/10/01/11/10/01/10/00/00/00/00/00/0
chr2R6139542.TA.PASSAC=53GT0/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/00/00/00/00/00/01/00/01/10/00/00/00/00/00/01/11/10/01/11/11/10/00/00/00/00/00/01/10/00/01/00/00/01/10/00/10/10/01/11/11/00/00/00/00/00/01/01/10/00/00/01/11/00/01/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/01/11/10/00/00/00/00/01/11/10/00/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/00/00/01/10/00/01/10/00/00/00/01/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/11/10/00/00/00/00/00/01/10/01/00/00/00/00/01/10/01/10/00/00/00/01/10/00/01/10/00/00/00/00/01/11/10/01/11/10/01/10/00/00/00/00/00/0
chr2R6139974.CA.PASSAC=51GT0/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/00/00/00/00/00/01/10/01/11/10/00/00/00/00/01/11/10/01/10/01/10/00/00/00/00/00/01/10/00/01/10/00/01/10/00/10/00/00/00/01/10/00/01/10/00/01/11/10/00/00/01/11/10/00/00/00/00/01/00/00/01/10/10/01/10/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/01/10/00/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/00/00/01/10/00/01/10/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/01/10/00/01/10/10/00/00/00/01/11/10/01/11/10/01/10/00/00/11/10/00/0
chr2R6139559.TG.PASSAC=69GT0/00/00/00/00/00/01/10/01/10/01/10/01/10/00/00/01/10/00/00/00/00/00/01/10/01/10/00/01/10/00/00/01/11/10/01/11/11/11/10/00/00/01/10/01/10/00/01/00/00/01/11/10/10/10/01/11/11/10/00/00/00/00/01/01/10/00/00/01/11/10/01/00/00/00/00/01/11/11/10/00/01/10/00/00/00/00/00/01/10/01/11/11/00/00/00/00/01/11/10/00/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/01/10/01/10/00/01/10/01/10/00/01/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/11/10/00/00/00/00/00/11/10/01/00/00/00/00/01/10/01/10/00/01/10/01/10/00/01/10/00/00/00/00/01/11/10/01/11/10/01/10/01/10/00/00/00/0
chr2R6139577.CACC.PASSAC=85GT0/00/00/01/00/00/00/00/11/11/01/01/01/10/00/00/00/00/00/00/10/00/00/01/11/01/00/00/00/01/10/00/01/11/10/01/11/11/00/01/10/01/00/00/01/00/00/01/10/00/01/10/01/00/10/01/01/01/10/01/01/00/00/00/11/00/00/00/11/00/00/11/10/00/00/00/00/00/01/10/00/01/10/00/00/00/00/01/10/00/01/11/10/10/00/00/00/01/11/10/00/01/01/10/01/00/00/00/00/00/10/00/00/01/11/01/01/10/00/00/01/10/00/10/01/11/10/10/01/10/10/00/00/01/10/00/00/00/00/00/00/01/10/00/00/01/10/01/00/00/11/00/00/01/00/00/00/00/00/01/00/00/11/10/00/00/00/00/00/01/00/00/10/00/00/00/11/00/01/10/10/00/00/01/00/00/01/00/00/00/10/10/01/11/10/11/01/11/11/10/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R6139604CCGAAATTGTTTAGATTACAGGGCCGAAAAGAAAAGAAAACAAAACGCAGCDmelanogaster-FlyFactorSurvey-CG7928_SOLEXA_5_FBgn0039740
chr2R6139542GCCTTTATTGGATGTCTGGTTCTTTAAATGGGGAGAATGCATGTTCCATCA
chr2R6139974ACTATCGATGTTTCCTGAAAACCCCTTGCAAATATAAAAAGATAATACTTADmelanogaster-JASPAR_2014-STAT92E-MA0532.1 , Dmelanogaster-JASPAR_CORE-dl_2-MA0023.1
chr2R6139559GGTTCTTTAAATGGGGAGAATGCATGTTCCATCACACACACACACCCGAAA
chr2R6139577AATGCATGTTCCATCACACACACACACCCGAAATTGTTTAGATTACAGGGCNA