Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
64306771.20011787258125e-090.1479789195690450.1434036013577620.119870971612586
64305279.38138316382657e-090.08712269178201630.07134928110589270.0807902203403947
64306901.29407344729134e-080.4156636058358940.1143647864202260.124872060081795
64302413.19995884365977e-080.09941265996318870.1199920565034030.165226686498164
64299633.60774505966631e-080.1056562958956180.05434707492066620.140220789334944

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R6430677.ACG,GC.PASSAC=1,94GT2/22/22/22/20/02/20/02/22/20/02/20/02/22/20/00/00/00/00/02/20/00/02/20/00/02/22/20/00/00/00/00/02/20/02/20/00/00/02/22/20/00/00/00/02/22/20/00/20/00/02/22/22/22/20/02/22/22/20/00/00/00/00/00/00/02/22/22/22/20/00/02/02/20/00/00/20/00/00/02/20/02/20/00/00/00/00/02/22/20/00/02/22/02/20/00/00/02/20/02/22/20/00/02/20/02/22/20/02/22/20/00/00/02/20/02/20/00/00/02/20/02/20/00/02/22/20/20/00/00/00/02/22/20/22/22/20/00/00/00/02/20/02/20/01/12/20/02/20/00/02/20/02/22/22/20/02/20/02/20/00/00/02/20/00/02/20/02/20/02/22/22/00/00/02/20/00/02/22/20/22/20/02/20/00/00/02/20/22/22/20/02/20/02/20/02/20/02/20/02/20/00/02/20/00/0
chr2R6430527.AG.PASSAC=95GT1/11/11/11/10/01/10/01/11/10/01/10/01/11/10/00/00/00/00/01/10/00/01/10/00/01/11/10/00/00/00/00/01/10/01/10/00/00/01/11/10/00/00/00/01/11/10/00/10/00/01/11/11/11/10/01/11/11/10/00/00/00/00/00/00/01/11/11/11/10/01/11/01/10/00/01/00/00/00/01/10/01/10/00/00/00/00/01/11/10/00/01/11/01/10/00/00/01/10/00/01/10/00/01/10/01/11/10/01/11/10/00/00/01/10/01/10/00/00/01/10/01/10/00/01/11/11/00/00/00/00/01/11/10/11/11/10/00/00/00/01/10/01/10/01/11/10/01/10/00/01/10/01/11/11/10/01/10/01/10/00/00/11/10/00/01/10/01/10/01/11/11/10/00/01/10/00/01/11/10/11/10/01/10/00/00/01/10/01/11/10/01/10/01/10/01/10/01/10/01/10/00/01/10/00/0
chr2R6430690.CG.PASSAC=79GT1/10/01/11/10/01/10/00/01/10/01/10/00/01/10/00/00/00/00/01/10/00/00/00/00/01/11/10/00/00/00/00/00/00/01/10/00/00/01/11/10/00/00/00/01/11/10/00/10/00/01/11/11/10/10/01/10/01/10/00/00/00/00/00/00/01/11/11/11/10/00/01/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/01/11/10/00/01/10/10/00/00/00/01/10/01/11/10/00/01/10/01/10/00/00/10/10/00/00/01/10/01/10/00/00/01/10/01/10/00/01/11/10/10/00/00/00/01/11/10/11/11/10/00/00/00/01/10/01/10/01/11/10/01/10/00/01/10/01/11/10/00/01/10/01/10/00/00/01/10/00/01/10/01/10/01/11/01/00/00/01/10/00/01/11/10/10/00/00/00/00/00/01/10/01/11/10/01/10/01/10/01/10/00/00/01/10/00/00/00/00/0
chr2R6430241.CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCTTTTCGACGGCTACAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGATTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTCC,CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCGTTTCGACGGCTACAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGATTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC,CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCGTTTCGACGGCTACAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGTTTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC,CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCGTTTCGACGGCTAGAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGTTTGACAATCGCTCACCTGAATTTCAATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC,CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCGTTTCGACGGCTAGAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGTTTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC,CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCTTTTCGACGGCTACAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGTTTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC,CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCTTTTCGACGGCTAGAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGATTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC,CACGCATGCCAAATGTTCTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCTTTTCGACGGCTAGAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGTTTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC,CACGCATGCCAAATGTTTTAACCAATACTAATTGATGCGAGGAGTGTCGTTTCTGTGGCAAAATCATAAATTCTACAGATCTTTTCGACGGCTACAGTGTGCATATGAAAGGTGAACGTATAGAGATGATGGTCCCCGCATAACATCACGTCGATTGACAATCGCTCACCTGAATTTCCATTGGAGTTTTCATGGCAACTCGGTCACGTTCCCTC.PASSAC=1,2,1,1,74,25,1,1,2GT5/56/65/55/50/05/50/06/65/50/05/50/66/64/40/00/00/00/00/05/59/90/06/60/00/05/55/50/00/00/00/00/06/60/05/50/00/00/05/55/50/00/00/06/65/55/50/07/30/00/05/55/55/56/50/05/56/65/50/00/00/00/00/00/00/05/55/55/55/50/02/25/05/50/00/00/60/00/00/05/50/06/60/00/00/00/00/05/55/50/00/05/58/26/60/00/00/05/50/05/55/50/00/05/50/05/56/60/06/66/50/00/00/05/50/05/50/00/00/05/50/05/50/00/05/55/55/00/00/00/00/05/55/50/55/55/50/00/00/00/65/50/05/50/05/55/50/05/50/00/05/50/05/55/56/60/05/50/05/50/00/00/65/50/00/01/00/05/59/95/55/65/50/06/65/50/00/05/55/50/56/60/06/60/00/00/05/50/65/55/50/05/50/05/50/05/50/06/60/05/50/00/06/60/00/0
chr2R6429963.TC.PASSAC=95GT1/11/11/11/10/01/10/01/11/10/00/00/11/11/10/00/00/00/00/01/10/00/01/10/00/01/11/10/00/00/00/00/01/10/01/10/00/00/01/11/10/00/00/00/01/11/10/01/00/00/01/11/11/11/10/01/11/11/10/00/00/00/00/00/00/01/11/11/11/10/00/00/11/10/00/00/10/00/00/00/00/01/10/00/00/00/00/01/11/10/00/01/10/11/10/00/00/01/10/01/11/10/00/01/10/01/11/10/01/11/10/00/00/01/10/01/10/00/00/01/10/01/10/00/01/11/11/00/00/00/00/01/11/10/11/11/10/00/00/00/11/00/01/10/01/11/10/01/10/00/01/10/01/11/11/10/01/10/01/10/00/00/11/10/00/01/10/01/10/01/11/11/10/00/01/10/00/01/11/10/11/10/01/10/00/00/01/10/01/11/10/01/10/01/10/01/10/01/10/01/10/00/01/10/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R6430677TCCGCTTGAATTTATGCAATCCGCACTGTTTTTTAGACTACTAACAATTTADmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180
chr2R6430527GCGCAAACACTCACAAACACCTATAAATTATTATATATTTCGTCTTTTTGC
chr2R6430690ATGCAATCCGCACTGTTTTTTAGACTACTAACAATTTATCCTGATTTTTTA
chr2R6430241TTAACATTTCTGTGCGAAATTCTACACGCATGCCAAATGTTCTAACCAATANA
chr2R6429963TCCGACACCTCTCTCCATCTCTCGTTGCAGTTGTTTAAGGGTGTGCGAGGG