Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
65611282.93073640614822e-070.7192790725722130.8445770855101750.389540021388597
65611681.07902013494437e-050.7813187417088580.8178157219266890.962121746437372
65268981.56206516463346e-050.3195660026945020.07539772176101810.800687353306057
65615990.3909836787136960.07717980050209282.81042561497605e-050.00695959193699204
65268962.98670293663933e-050.3022742563649010.07968266942243220.745557251182692

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R6561128.AC.PASSAC=168GT1/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/11/10/00/01/11/11/11/10/01/11/11/10/01/11/10/01/11/11/11/11/11/11/11/11/10/01/11/10/01/10/01/11/11/10/01/11/11/11/11/11/11/11/10/11/11/11/10/10/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/10/11/11/11/10/01/11/10/00/00/01/10/01/11/11/11/10/01/11/11/10/01/11/10/01/11/11/11/11/11/10/01/11/11/11/10/00/01/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/10/01/11/11/11/11/10/01/11/00/11/11/11/11/11/11/11/11/10/01/11/11/10/00/00/00/11/11/10/01/11/10/01/10/01/11/11/11/11/11/11/11/11/1
chr2R6561168.TTAGGG,TG,TGA,TGG,TTG.PASSAC=4,124,4,35,9GT4/42/20/02/02/02/24/32/20/02/22/52/20/02/22/22/22/22/22/24/22/22/22/00/02/22/02/22/20/02/24/40/00/02/20/00/02/24/42/22/22/22/00/02/22/00/02/20/00/02/20/04/44/42/20/02/04/42/22/22/24/02/22/20/24/42/22/24/00/01/02/21/22/02/22/20/32/22/22/22/02/02/24/42/02/54/42/22/22/22/02/24/02/42/22/22/22/02/22/20/02/52/22/22/22/52/02/24/42/42/22/22/22/20/04/42/20/00/00/02/20/02/54/42/20/00/02/52/51/10/02/52/00/02/24/44/24/42/22/20/00/00/00/02/20/00/02/02/54/44/32/22/22/22/20/02/02/24/42/24/32/22/20/04/42/02/22/22/20/02/20/00/02/24/40/04/20/02/24/42/20/02/22/22/20/00/00/00/22/22/20/02/21/10/02/20/02/22/24/44/44/44/40/02/24/4
chr2R6526898.CT.PASSAC=29GT0/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/01/11/10/00/00/01/11/00/01/10/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/10/00/00/00/01/11/10/00/00/00/00/00/00/00/01/10/00/01/10/00/01/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/01/00/00/00/00/00/00/00/00/00/00/0
chr2R6561599.AG.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2R6561599.ATTCATGACGTATGAA,ATTCATGACATATGA,ATTCATGACGTATAA.PASSAC=1,17,18GT0/02/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/03/30/00/20/02/20/02/22/22/22/20/00/00/00/00/00/03/00/00/00/00/00/00/00/00/00/00/00/00/00/02/23/30/00/03/30/00/00/00/00/03/32/32/20/00/00/00/00/00/00/00/00/02/20/02/20/00/00/00/00/00/00/00/03/30/00/02/20/00/00/00/03/30/00/00/00/00/00/00/00/00/00/00/03/30/03/30/00/00/00/00/00/00/00/00/00/00/03/30/00/00/00/00/00/00/00/03/30/00/00/00/00/03/32/20/00/00/00/00/00/00/00/03/30/00/00/00/03/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/23/30/00/03/30/00/03/3
chr2R6526896.GC.PASSAC=29GT0/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/11/10/00/00/00/00/00/01/10/00/00/00/01/11/10/00/00/01/11/00/01/10/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/10/00/00/00/01/11/10/00/00/00/00/00/00/00/01/10/00/01/10/00/01/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/01/10/00/00/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R6561128GTCTTTTCTTCGCCTGCTGTTTTCAGAAAAGTGCGTTGGCTTTTCCAACAA
chr2R6561168TTTTCCAACAACCACCCCCTTTTTTTAGCCGCCCAGCTTAACGGTCGGGGTNA
chr2R6526898TTTGTTTACGGAATTTATTTTCGGCAGGCTACTTTTTGAAGGAAAGATTAADmelanogaster-FlyFactorSurvey-Eip93F_SANGER_10_FBgn0013948
chr2R6561599GAATTGTGCGACGCATGACACCTGATTCATGACGTATGACAGGTGTCGTTCDmelanogaster-FlyFactorSurvey-Fer2_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Fer2_da_SANGER_5_FBgn0038402 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_3_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_3_FBgn0011277 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_FBgn0011277
chr2R6561599GAATTGTGCGACGCATGACACCTGATTCATGACGTATGACAGGTGTCGTTCNA
chr2R6526896GTTTTGTTTACGGAATTTATTTTCGGCAGGCTACTTTTTGAAGGAAAGATTDmelanogaster-FlyFactorSurvey-Eip93F_SANGER_10_FBgn0013948