Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
80287498.35778076748984e-100.07924540805943170.5283982171142750.0944225195879192
80279988.90591020145604e-090.1140904298058880.4998639832483480.155686741169511
80317717.50278532821243e-080.2167740346556160.4330015388181370.478450079163135
80417813.7105770644167e-070.2083297599213410.06230024641720570.0290714119638023
80589715.0408133219756e-070.399942380106610.5047544185867350.66003692796507

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R8028749.TC.PASSAC=134GT1/11/11/10/01/11/11/10/01/11/11/11/11/10/00/01/11/10/01/11/11/11/11/11/11/10/00/01/10/00/01/11/11/10/01/10/01/11/10/01/11/10/00/00/01/10/01/11/01/11/10/00/01/10/11/11/11/11/10/00/00/00/00/00/00/01/11/11/11/11/11/11/00/01/11/11/10/01/10/00/01/00/01/11/11/10/00/01/11/10/01/11/10/11/11/11/11/11/11/10/01/11/11/11/10/01/10/01/10/00/11/11/10/00/00/01/10/01/11/10/01/11/11/10/00/00/00/11/11/11/11/11/11/11/00/01/11/10/01/11/00/00/00/01/11/11/10/01/11/11/11/10/01/10/01/10/01/10/00/01/11/10/11/10/01/10/01/10/00/01/11/10/00/01/10/01/11/11/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/10/00/01/11/10/00/01/10/01/11/11/10/0
chr2R8027998.TCCTGTTTTTATT,TCCAGTTTTTAT,TCCTGTTTTAT.PASSAC=1,3,73GT0/00/00/03/00/00/00/03/30/00/00/00/00/03/33/30/00/03/30/00/00/00/00/00/00/03/03/30/03/33/30/00/00/00/00/03/30/00/03/30/00/03/03/33/30/00/00/00/30/00/03/33/30/03/00/00/00/00/03/33/33/03/33/33/03/30/00/00/00/00/00/00/03/30/00/00/03/30/03/33/30/03/30/00/00/03/33/30/00/03/30/00/03/00/00/00/00/00/00/03/00/00/00/00/00/00/03/30/03/23/00/00/03/33/33/30/03/30/00/03/30/00/00/03/33/03/33/00/00/00/00/00/00/00/03/32/20/00/00/00/33/03/33/30/00/00/03/30/00/00/00/03/00/03/30/03/30/03/03/30/00/03/00/03/30/03/00/03/33/30/01/23/33/00/03/00/00/00/00/00/00/00/00/00/00/00/00/00/03/00/00/00/00/03/03/00/00/03/03/30/03/00/00/00/03/0
chr2R8031771.GC.PASSAC=119GT1/11/11/10/01/11/11/10/01/11/11/11/11/10/00/01/11/10/01/11/10/01/11/11/11/10/00/01/10/00/01/11/11/10/01/10/01/11/10/01/11/10/00/00/01/10/01/11/01/10/00/01/10/00/11/11/11/11/10/00/00/00/00/00/00/01/11/10/11/11/10/11/00/01/11/11/10/01/10/00/01/10/01/11/11/10/00/01/11/10/01/11/10/01/11/11/11/11/11/00/01/11/11/11/11/11/10/01/10/01/01/11/10/00/00/01/10/00/01/10/01/11/10/00/00/00/00/01/11/11/11/11/11/10/10/00/01/10/01/11/10/00/00/00/01/11/10/01/11/11/11/10/01/10/01/10/01/10/00/01/10/00/00/00/01/10/01/10/00/01/10/00/00/01/10/01/11/11/11/10/01/11/11/10/01/11/10/00/00/00/01/11/11/10/00/01/11/10/00/01/10/01/11/11/10/0
chr2R8041779.TTTT.PASSAC=2GT0/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2R8041781.TTT.PASSAC=168GT1/11/01/10/01/01/11/10/01/11/11/01/11/10/01/11/11/10/01/11/11/11/11/01/01/10/00/01/10/00/01/11/11/10/11/10/11/11/00/11/11/10/00/01/11/00/01/00/11/11/10/01/11/01/01/11/01/11/10/10/01/10/00/10/00/01/11/11/11/11/10/11/00/01/01/11/10/01/10/00/01/11/11/01/01/00/00/11/11/10/01/01/10/11/11/01/11/01/11/10/11/01/11/11/11/01/10/01/10/11/01/11/00/10/10/01/10/11/11/10/11/11/01/00/00/00/10/11/00/11/01/11/01/01/10/01/11/11/11/11/00/11/00/11/11/11/10/11/11/01/01/10/01/10/11/11/11/10/01/11/10/11/01/10/01/10/11/10/00/01/11/00/00/01/00/11/11/11/11/11/01/11/11/11/01/01/00/11/01/00/01/11/01/10/11/11/11/10/10/11/10/01/11/11/10/0
chr2R8058971.TC.PASSAC=64GT0/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/00/01/10/00/01/10/00/00/00/00/01/10/00/00/00/00/00/01/10/01/11/10/01/10/00/00/01/10/00/01/10/00/10/00/01/10/00/00/00/00/00/00/01/11/10/00/00/01/11/10/00/01/00/00/00/10/11/10/00/00/01/10/01/11/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/01/00/00/01/11/10/00/01/11/10/00/00/00/01/11/11/11/11/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/01/10/00/00/00/01/10/01/10/00/00/01/10/00/00/00/00/01/10/01/11/11/11/10/01/11/11/10/01/10/00/00/00/00/10/00/00/01/10/00/01/10/00/01/00/00/00/01/10/01/10/01/11/10/01/10/01/10/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R8028749CATTGCCCCCTCAATCGGCAAACTTAAGCTAATCCCTGCGACTCGTTTCAG
chr2R8027998TTCTGCCTTTATAGTTAGTTTTTATCCTGTTTTTATTTAATGAATTTCAAANA
chr2R8031771TGAATTGAAGCATATAGCTATGCAGAAGACTCCAAGGCTCTAACTTTAACC
chr2R8041779CTTGTTGGGAAAAGAATGGTTTTTTTTTATTACAAAATGTACCTACATGCTNA
chr2R8041781TGTTGGGAAAAGAATGGTTTTTTTTTATTACAAAATGTACCTACATGCTAGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768 , Dmelanogaster-JASPAR_CORE-br_Z1-MA0010.1
chr2R8058971ACCCGGTCGGTCAGGGGATGTGGATCTGAATCGGGGTGCGGTGTGAGTCAG