Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
85236071.95301643387627e-110.8997680422523560.5008913350712540.702242741002077
85221882.40780909249395e-060.8911525688732070.5579792935152190.814664404331824
85280048.37235465474091e-060.4384612220517670.2887526886170620.972820559329805
85737799.15854292558383e-060.452732479353960.6172692271371740.574454786730562
85237511.92422187762859e-050.4200669884253660.2290786165740350.195480198187098

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr2R8523607.TTT,TTT.PASSAC=84,37GT0/00/01/11/00/00/01/10/00/01/10/01/01/02/11/00/00/00/00/00/01/01/00/00/00/00/00/00/00/00/01/00/01/01/00/02/10/00/02/00/00/00/00/02/00/01/10/00/02/11/10/00/00/01/22/02/11/11/22/11/02/10/01/10/20/00/01/00/20/00/00/10/11/00/00/00/02/10/01/12/00/02/20/00/00/00/01/01/01/00/01/10/02/01/01/00/00/02/00/00/00/01/00/00/00/00/01/01/00/00/20/01/00/00/01/21/02/00/02/02/00/00/00/01/10/02/11/21/20/00/00/10/00/10/10/00/00/01/00/00/01/20/01/00/01/01/00/00/00/02/00/00/00/00/00/02/11/01/01/02/01/00/00/00/01/01/01/01/01/01/01/01/22/10/01/00/00/00/00/00/12/22/22/00/00/01/01/00/01/00/10/00/00/02/11/01/00/01/21/11/01/00/01/01/10/0
chr2R8522188.GC.PASSAC=90GT0/00/00/01/10/00/00/00/00/00/01/10/01/11/11/10/00/01/10/00/01/11/10/00/00/00/00/00/00/00/01/10/01/11/10/01/10/00/01/10/00/00/00/01/10/01/10/00/01/10/00/00/00/01/11/11/10/01/11/11/11/10/00/00/10/00/01/11/11/11/11/01/01/10/00/00/01/10/00/01/10/01/10/01/10/00/01/11/11/10/00/00/01/11/11/10/00/01/10/00/00/01/10/00/00/00/01/11/10/01/00/00/00/00/01/11/11/10/01/11/10/00/00/00/00/01/11/11/10/01/10/00/00/00/10/00/00/01/10/01/00/10/01/10/01/10/00/00/00/01/10/00/01/11/10/01/11/10/01/11/11/10/10/01/11/10/00/00/01/10/01/11/11/10/00/00/00/00/00/00/01/11/11/10/00/01/11/10/01/10/00/00/00/01/11/11/10/01/11/11/11/10/00/01/10/0
chr2R8528004.AT.PASSAC=102GT0/00/01/11/11/10/01/10/00/01/10/01/10/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/01/10/00/01/10/00/00/00/01/10/01/10/00/11/11/10/00/00/01/11/11/11/11/11/11/11/10/01/11/10/00/01/11/10/01/10/11/11/11/11/11/11/11/11/10/01/10/00/00/00/00/01/11/11/11/11/10/01/11/11/10/00/01/10/00/00/01/10/00/00/10/01/11/10/01/10/01/10/01/11/11/11/10/01/11/10/00/01/11/10/01/10/01/11/10/01/10/00/00/00/00/01/11/10/00/00/00/01/10/01/10/00/00/01/11/10/00/00/00/01/11/11/10/01/11/11/10/10/00/01/10/00/00/00/00/01/11/11/10/00/01/10/01/10/00/11/11/11/10/00/01/11/10/01/10/10/01/10/01/11/11/10/01/11/11/11/10/00/00/00/0
chr2R8573779.CG.PASSAC=22GT0/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/11/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/01/10/00/0
chr2R8523749.GGGG.PASSAC=8GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr2R8523751.GGG,GT.PASSAC=42,6GT0/00/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/20/00/00/00/01/10/00/00/00/01/10/00/00/00/00/11/01/20/00/01/00/01/00/00/00/10/00/00/00/10/00/00/00/00/00/00/00/01/00/00/01/20/01/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/20/00/00/00/00/00/00/00/00/00/00/00/10/01/00/00/00/00/01/00/01/11/00/00/00/00/00/01/00/00/10/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/00/01/00/01/00/00/00/00/00/01/00/01/00/01/00/00/01/10/01/10/00/00/00/00/01/11/11/10/00/00/20/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/01/20/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr2R8523607TACTCATTTTGGATGGTTTTTTTTTCAAACGAAACGAGGTGATGGAGTGGTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768
chr2R8522188ATGACGAACCTTGGCCACAATGTCGGCGGTGCTGCGACTCACACGACTGTC
chr2R8528004TATCACACCAACCCCACCCCCAAAATCTGAAGTTTTTTTAAACACCCGCCTDmelanogaster-FlyFactorSurvey-sr_SANGER_5_FBgn0003499 , Dmelanogaster-FlyFactorSurvey-sr_SOLEXA_5_FBgn0003499
chr2R8573779CAGTTAGAAAATTGTGATACAGTACTTTATACATTTTCTTTAGCTTACTAA
chr2R8523749ACCATTTTAAATGTTCTTTTTCGGGGGGTTTCTTGCGATATATCTATTAAANA
chr2R8523751CATTTTAAATGTTCTTTTTCGGGGGGTTTCTTGCGATATATCTATTAAATADmelanogaster-FlyFactorSurvey-Eip93F_SANGER_10_FBgn0013948 , Dmelanogaster-FlyFactorSurvey-sug_SOLEXA_5_FBgn0033782