Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
121255033.29602110870103e-140.4244107655383130.2573417589236610.356353456598407
121254964.01035007426325e-140.418234511689320.2551369937404150.265700777970516
121252799.33695661951742e-140.9657392464200650.4579808176369240.518289450107389
121252772.17445683647213e-130.9469286244730870.3992731943850430.498996175612145
121252884.65126096364726e-120.4601885000880110.6158609298335640.161074675317068

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L12125503.GA.PASSAC=131GT1/10/00/01/11/11/10/01/11/11/10/01/10/01/10/01/10/01/11/11/10/01/11/11/11/10/01/11/10/00/01/10/01/10/00/01/10/00/00/01/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/00/00/00/01/10/00/00/01/11/11/11/10/00/00/00/01/11/01/11/10/00/00/01/11/10/01/11/10/01/11/10/01/11/11/00/01/11/10/01/10/00/00/01/11/10/00/00/00/01/10/01/11/11/11/10/00/00/00/01/10/01/10/01/10/00/01/11/10/01/11/10/01/10/01/10/01/11/11/11/11/11/10/00/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/00/01/11/10/00/01/10/01/11/11/11/11/11/11/11/11/10/01/11/11/10/01/11/10/01/11/10/00/00/01/11/11/11/11/11/11/00/01/10/01/11/10/01/11/11/10/01/11/11/0
chr3L12125496.TC.PASSAC=131GT1/10/00/00/11/11/10/01/11/11/10/01/10/01/10/01/10/01/11/11/10/01/11/11/11/10/01/11/10/00/01/10/01/10/00/01/10/00/00/01/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/00/00/00/01/10/00/00/01/11/11/11/10/00/00/00/01/11/01/11/10/00/00/01/11/10/01/11/10/01/11/10/01/11/11/10/01/11/10/01/10/00/00/01/11/10/00/00/00/01/10/01/11/11/11/10/00/00/00/01/10/01/10/01/10/00/01/11/10/01/11/10/01/10/01/10/01/11/11/11/11/11/10/00/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/10/01/11/10/00/01/10/01/11/11/11/11/11/11/11/11/10/01/11/11/10/01/11/10/01/11/10/00/00/01/11/11/11/11/11/11/00/01/10/01/11/10/01/11/11/10/01/11/11/0
chr3L12125279.CG.PASSAC=72GT1/10/00/01/01/11/10/00/00/01/10/00/00/01/10/01/10/01/10/01/10/00/00/00/00/00/01/11/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/11/11/10/00/00/00/01/11/11/11/10/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/01/10/01/10/00/00/01/11/10/01/10/00/00/00/01/10/00/00/00/01/10/00/01/10/00/01/10/00/00/01/10/00/00/00/00/00/01/11/10/00/01/10/01/10/01/10/01/11/10/01/11/10/00/00/00/00/01/11/11/11/10/01/10/00/01/11/10/01/10/00/01/10/00/00/01/10/01/11/10/01/11/10/00/00/00/00/01/11/11/10/00/01/10/01/11/10/00/00/00/01/10/00/00/00/01/00/01/10/01/11/10/01/11/11/10/00/01/11/0
chr3L12125277.CT.PASSAC=72GT1/10/00/01/01/11/10/00/00/01/10/00/00/01/10/01/10/01/10/01/10/00/00/00/00/00/01/10/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/11/11/10/00/00/00/01/11/11/11/10/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/01/10/01/10/00/00/01/11/10/01/10/00/00/00/01/10/00/00/00/01/10/00/01/10/00/01/10/00/00/01/10/00/00/00/00/00/01/11/10/00/01/10/01/10/01/00/01/11/10/01/11/10/00/00/00/00/01/11/11/11/10/01/10/00/01/11/10/01/10/00/01/10/00/00/01/10/01/11/10/01/11/10/00/00/00/00/01/11/11/10/00/01/10/01/11/10/00/00/00/01/10/00/00/00/01/00/01/10/01/11/10/01/11/11/10/00/01/11/0
chr3L12125288.CA,AAAC,AAACAG,G.PASSAC=7,65,71,2GT3/30/00/03/03/03/30/02/22/23/30/02/30/03/30/03/30/03/32/23/30/02/22/02/22/20/03/33/20/00/02/20/02/20/00/02/20/00/00/02/23/32/00/02/22/03/33/33/32/22/22/22/23/03/33/33/42/20/00/00/00/02/20/00/00/02/23/33/32/20/00/00/00/02/02/02/02/20/00/00/02/02/20/02/03/00/02/23/30/03/32/22/20/03/33/10/03/40/00/00/02/03/30/00/00/00/03/30/02/03/02/22/01/30/00/00/01/30/02/20/02/20/00/03/33/00/02/03/10/03/30/03/00/03/33/32/21/33/32/20/00/02/02/23/33/33/33/10/02/32/22/23/33/32/23/32/20/03/02/20/00/03/00/03/03/32/23/33/32/22/02/02/20/03/03/33/30/02/23/30/03/33/32/20/00/02/03/32/02/22/22/23/00/13/30/03/33/30/03/33/33/00/02/23/32/0
chr3L12125288.CCAG.PASSAC=1GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L12125503GGCTCCGAGGAAAGTGGTCCACAAGGTGCGGAGTACAGGGCGTTGCCCATT
chr3L12125496GGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTGCGGAGTACAGGGCGTT
chr3L12125279ACCAATTGCTCGCATCCCTGGTCGCTAAAAAAACACACAAAGACTTGTTTTDmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr3L12125277GCACCAATTGCTCGCATCCCTGGTCGCTAAAAAAACACACAAAGACTTGTTDmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr3L12125288TCGCATCCCTGGTCGCTAAAAAAACACACAAAGACTTGTTTTGTTGTTCTTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L12125288TCGCATCCCTGGTCGCTAAAAAAACACACAAAGACTTGTTTTGTTGTTCTTDmelanogaster-FlyFactorSurvey-CG13897_SANGER_5_FBgn0035160 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172