Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
13421535.65793216066879e-080.5728705196245680.2912837419510310.237157175577539
13405741.10454227033308e-060.7781203666937640.277499191429890.463585152827206
13421296.94812572098657e-060.4641094497476450.06456058843984310.0156686438788758
13409831.48728672729834e-050.6268723257471110.050477479057510.147409713831194
13409822.74864193931089e-050.6241328080016760.06140838139305790.199264828642277

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L1342153.TGCTATCTT,TGCTAGCT.PASSAC=47,123GT0/00/00/02/11/02/20/02/22/21/12/20/02/20/02/20/02/21/12/22/22/22/22/20/01/12/21/11/12/22/22/21/12/21/12/22/22/22/22/22/22/21/00/02/21/02/22/22/21/10/02/21/12/22/22/22/22/22/22/22/22/21/12/20/02/20/02/21/12/20/01/11/12/22/20/01/12/22/21/12/22/22/22/21/02/20/02/21/12/21/11/12/22/22/22/21/10/02/22/22/22/22/22/22/21/02/22/20/02/21/12/22/22/21/02/22/22/20/01/02/22/20/02/22/20/02/22/22/20/02/22/22/22/22/22/22/22/21/12/20/00/00/02/22/22/22/20/02/01/02/21/11/11/12/21/02/21/11/00/01/02/22/22/20/01/02/22/20/02/21/01/12/22/21/00/00/00/02/21/11/02/22/22/21/02/20/00/00/02/22/22/22/21/11/12/22/22/22/22/20/02/22/21/12/20/0
chr3L1340574.GA.PASSAC=50GT0/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/01/11/11/10/01/10/00/00/00/00/00/00/00/00/01/11/10/01/11/10/01/10/00/00/01/10/00/01/11/11/10/00/00/00/00/01/11/10/00/00/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/01/11/11/10/00/00/01/11/10/01/11/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/01/10/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/01/10/00/00/01/10/01/10/00/00/01/10/01/11/10/00/00/01/10/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/0
chr3L1342128.TTT.PASSAC=4GT0/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L1342129.TTT,TTT,TTTT.PASSAC=3,122,85GT0/00/00/02/33/03/20/02/22/03/32/00/02/00/03/20/02/30/32/00/20/22/02/00/00/12/00/33/22/02/32/30/30/13/22/02/20/20/22/20/33/22/30/02/03/02/03/22/03/00/02/03/02/00/32/00/22/02/00/20/20/23/03/20/00/30/02/02/32/00/01/00/30/22/00/03/20/33/03/20/30/23/23/23/02/00/02/03/03/23/22/30/32/32/00/23/20/02/00/20/20/00/30/33/20/20/32/00/02/00/20/32/00/33/20/22/02/00/03/02/02/00/00/32/00/00/20/03/20/00/23/22/00/02/00/32/02/03/23/20/00/00/00/22/02/02/30/00/20/30/03/33/23/02/33/22/03/23/00/03/02/33/20/20/03/02/00/20/02/33/03/22/02/03/20/00/00/02/33/03/23/22/22/33/22/00/00/00/03/22/00/00/33/23/22/02/02/03/02/00/00/00/22/30/30/0
chr3L1340983.AC.PASSAC=61GT0/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/01/11/10/00/00/00/00/01/10/00/00/00/00/01/11/11/10/00/01/10/01/10/00/00/00/00/00/01/00/00/00/01/10/00/00/01/11/10/01/10/00/00/00/00/01/11/10/00/00/01/11/11/10/01/10/01/11/11/10/00/00/01/11/10/01/11/10/00/01/00/00/00/01/10/01/11/10/01/10/01/10/00/00/01/11/10/00/01/10/00/00/00/01/10/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/01/10/01/10/00/00/01/10/01/11/10/01/10/01/10/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/01/11/11/10/00/00/00/00/00/00/01/10/01/10/00/01/10/00/00/01/10/00/01/10/00/00/00/0
chr3L1340982.CT.PASSAC=61GT0/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/01/11/10/00/00/00/00/01/10/00/00/00/00/01/11/11/10/00/01/10/01/10/00/00/00/00/00/01/00/00/00/01/10/00/00/01/11/10/01/10/00/00/00/00/01/11/10/00/00/01/11/11/10/01/10/01/11/11/10/00/00/01/11/10/01/11/10/00/01/10/00/00/01/10/01/11/10/01/10/01/10/00/00/01/11/10/00/01/10/00/00/00/01/10/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/01/10/01/10/00/00/01/10/01/11/10/01/10/01/10/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/01/11/11/10/00/00/00/00/00/00/01/10/01/10/00/01/10/00/00/01/10/00/01/10/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L1342153TGCGGGGCTACAGTTACCAAACACTGCTATCTATGTTAATCAACTGCAGTGNA
chr3L1340574CTACGTCCTCATCCTCGTCCTGCAGAATCTTTCGCTTGCTGGAGTTCGGCG
chr3L1342128AACAACGTGCGCACGTTTTTTTTTTTGCGGGGCTACAGTTACCAAACACTGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L1342129ACAACGTGCGCACGTTTTTTTTTTTGCGGGGCTACAGTTACCAAACACTGCDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L1340983GTTCACTTGGTCGTCGATTTCGTCAACCACTTTGGTTTCAACATTACATTT
chr3L1340982TGTTCACTTGGTCGTCGATTTCGTCAACCACTTTGGTTTCAACATTACATT