Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
170406521.12393786983418e-050.5705981628763030.9168315771641550.242780183107634
170659740.467196361659140.3186709169504990.01249899303546250.000307316964380771
169691140.375473266531640.1097447381512480.0005138045824124890.0897589900449738
170659750.4725870445155530.16131797901560.02944909533952990.000514799094785272
171178210.02743221821575120.1347727473746980.0007407124681204520.599663006988078

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L17040652.TC.PASSAC=148GT1/10/00/01/00/00/01/11/10/01/10/01/10/00/00/11/11/11/11/11/11/10/01/10/01/11/11/11/01/11/10/01/11/11/11/10/01/11/10/01/11/10/00/01/11/11/11/11/10/01/11/11/00/01/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/10/01/11/10/01/11/10/00/01/11/11/11/10/00/01/11/11/11/11/11/11/10/01/11/11/10/01/11/11/10/00/01/10/00/01/11/10/01/11/11/10/01/11/11/11/11/10/01/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/01/11/10/01/11/11/11/11/11/11/11/11/10/01/10/01/11/10/01/11/11/11/10/00/01/10/01/11/10/11/11/10/01/11/11/11/10/01/11/11/10/01/10/00/01/10/01/11/10/01/11/10/00/00/00/01/11/11/11/11/11/11/11/1
chr3L17065974.TG.PASSAC=128GT0/01/11/11/11/00/01/10/01/00/00/11/11/10/00/01/11/11/10/00/01/10/01/10/00/01/10/00/01/10/00/00/11/11/10/01/11/11/11/10/01/10/01/10/00/00/01/11/11/11/10/00/01/10/00/00/01/11/10/00/01/11/10/01/11/11/11/11/11/11/11/11/11/11/11/10/00/00/01/11/11/11/10/01/11/11/11/11/11/11/10/01/11/11/11/10/01/11/10/01/11/10/10/00/00/00/10/01/10/00/01/11/10/00/01/10/00/01/11/10/01/11/11/11/11/10/10/01/10/01/10/01/10/00/00/01/11/11/11/11/11/11/10/01/10/00/01/11/10/11/11/11/10/01/10/00/00/01/11/11/11/11/11/11/10/01/11/10/01/11/11/10/01/11/11/11/10/11/10/10/00/01/10/01/11/11/11/11/10/01/11/10/01/11/10/01/10/00/00/00/00/00/00/00/01/0
chr3L16969112.TTTT,TT.PASSAC=11,139GT2/20/02/02/00/02/20/22/00/20/00/20/02/20/02/00/00/20/02/00/02/20/02/02/02/20/00/00/20/02/00/02/20/00/00/02/22/02/00/00/20/01/02/20/20/20/00/20/22/20/02/20/00/22/00/22/00/21/12/22/22/00/00/00/22/02/22/00/00/22/22/00/00/20/00/00/00/20/20/00/20/00/00/20/20/02/20/02/21/02/02/20/20/20/00/22/00/02/20/02/20/00/20/20/21/00/22/12/00/22/22/22/02/02/00/20/21/10/00/20/22/00/02/01/11/00/00/01/20/02/20/00/01/00/00/22/00/00/00/22/00/20/20/22/22/02/02/00/00/22/20/02/02/00/02/02/00/22/00/22/22/00/02/02/02/22/22/00/02/22/02/02/20/22/00/20/22/02/00/22/00/00/22/00/22/00/20/20/20/00/00/22/00/02/20/22/22/00/20/00/02/02/02/02/12/0
chr3L16969114.TTT,TTT,TTTT.PASSAC=10,3,34GT0/03/20/00/00/00/00/00/00/00/00/00/00/03/00/03/30/03/30/01/30/00/00/00/00/03/20/00/01/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/30/00/00/00/00/00/00/00/00/00/00/30/03/00/30/00/00/00/00/10/00/00/00/00/31/01/00/00/00/00/00/01/00/00/00/00/00/00/00/00/30/00/00/10/00/30/00/03/00/00/00/02/30/00/00/00/00/00/30/30/00/00/00/00/00/30/00/00/00/00/00/00/00/00/00/00/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/30/00/00/00/00/00/30/00/00/30/00/30/00/00/00/00/00/00/00/00/30/00/00/30/00/00/00/00/10/00/00/31/00/33/00/30/00/00/00/00/30/00/00/30/00/00/00/00/00/00/30/00/03/30/00/00/00/00/0
chr3L17065975.CG.PASSAC=120GT0/01/11/11/10/10/01/10/00/00/00/11/01/10/00/01/11/11/10/00/01/10/01/10/00/01/10/00/01/10/00/00/01/11/10/01/11/11/11/10/01/10/01/10/00/00/01/11/11/11/10/00/01/10/00/00/01/11/10/00/01/11/10/01/11/11/11/11/11/11/11/11/11/11/11/10/00/00/01/11/11/11/10/01/11/11/11/11/11/11/10/01/11/11/11/10/01/11/10/01/11/10/00/00/00/00/00/01/10/00/01/11/10/00/01/10/00/01/11/10/01/11/11/11/11/10/00/01/10/01/10/01/10/00/00/01/11/11/11/11/11/11/10/01/10/00/01/11/10/01/11/11/10/01/10/00/00/01/11/11/11/11/11/11/10/01/11/10/01/11/11/10/01/11/11/11/10/11/10/00/00/00/00/01/11/11/11/11/10/01/11/10/01/11/10/01/10/00/00/00/00/00/00/00/01/0
chr3L17117821.CCTAGCCAGC.PASSAC=132GT1/10/01/11/00/01/10/11/10/11/10/00/10/01/11/01/10/01/10/00/01/10/10/00/00/11/11/11/00/00/10/01/10/00/00/10/11/10/00/11/11/11/01/10/00/00/10/01/10/01/10/10/01/00/01/10/00/01/10/00/01/00/10/11/01/11/11/11/10/11/11/11/01/10/00/00/10/00/01/10/00/10/00/00/10/01/11/10/00/01/00/11/10/10/01/10/10/01/11/11/10/01/11/11/11/01/11/10/00/11/10/10/01/11/11/10/11/10/11/11/10/01/00/00/01/10/00/01/00/00/10/00/00/01/11/11/01/10/10/01/11/00/10/11/11/00/00/01/10/00/10/01/10/11/10/11/01/01/01/10/11/10/00/10/00/00/11/11/11/11/00/10/11/10/00/00/10/01/10/10/00/00/00/01/00/00/00/00/00/00/00/00/11/10/10/00/10/01/10/00/11/01/00/10/11/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L17040652GCTGACCGAACAGGAGCTGGACATTATGATCGAGGAGATCGATTCCGATGG
chr3L17065974CAACACCAGAGGCGGCGCCAGCGGTCGCACCTCTGCTGCGGCCCGGGGTAGDmelanogaster-JASPAR_2014-Mad-MA0535.1
chr3L16969112ATTTATCAAGAAAATGTTTTTTTTTTTAACTTTTAAGATGCGTCTAGCATCNA
chr3L16969114TTATCAAGAAAATGTTTTTTTTTTTAACTTTTAAGATGCGTCTAGCATCAGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L17065975AACACCAGAGGCGGCGCCAGCGGTCGCACCTCTGCTGCGGCCCGGGGTAGCDmelanogaster-JASPAR_2014-Mad-MA0535.1
chr3L17117821CCCACATTTCACCGAAAGAGACAGCCGGGAGCTGGAGCGAACGAGAGAGAG