Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
174186384.46289551336939e-070.5755625969567970.9530737562283720.196296818192165
174191376.00017872020707e-070.7294508342705610.899637533425620.268582530965959
174220182.02118817075018e-060.337788417245980.8075113445522640.616548502923839
174221022.02118817075018e-060.337788417245980.8075113445522640.616548502923839
174221812.02118817075018e-060.337788417245980.8075113445522640.616548502923839

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L17418638.GA.PASSAC=69GT1/10/01/11/00/10/00/01/10/00/00/00/00/01/10/01/11/10/01/11/10/00/00/00/00/00/00/00/01/10/00/00/01/10/00/01/11/10/00/01/11/10/00/00/00/00/00/01/10/00/01/10/01/10/00/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/01/11/10/00/00/10/01/11/10/00/00/00/01/10/00/00/01/10/00/00/01/11/01/11/11/11/11/11/10/00/01/10/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/01/00/00/01/10/01/10/00/00/00/00/00/10/00/01/10/00/00/00/01/11/11/11/11/10/00/10/01/10/00/00/00/01/11/10/00/00/00/01/11/10/10/01/10/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/01/01/10/01/1
chr3L17419137.GA,T.PASSAC=36,34GT1/10/01/10/20/22/20/01/10/00/00/00/00/01/10/01/12/20/01/12/20/00/00/00/00/00/00/00/02/20/00/00/01/10/00/01/11/10/00/01/12/20/00/00/00/00/00/02/20/00/01/10/02/20/00/00/01/10/00/01/11/10/00/00/00/02/20/00/00/00/02/22/20/00/00/00/01/11/10/00/00/00/01/00/00/00/01/10/00/00/02/21/01/12/22/22/22/01/10/00/01/10/00/00/00/00/00/00/01/20/00/02/20/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/01/00/00/02/20/02/20/00/00/00/00/01/00/00/00/00/00/00/00/02/22/22/21/11/10/00/20/02/20/00/00/00/00/01/10/00/00/02/22/22/20/20/01/10/00/00/00/00/01/12/20/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/02/02/01/10/02/1
chr3L17422018.AT.PASSAC=57GT1/10/01/10/10/11/10/01/10/00/00/00/00/01/10/01/10/00/01/11/10/00/00/00/00/00/00/00/01/10/00/00/01/10/00/01/10/00/00/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/01/11/10/00/00/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/11/01/10/01/10/00/01/10/00/01/10/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/00/00/01/10/01/10/00/00/00/00/11/00/00/00/00/00/00/00/01/10/00/01/11/10/00/10/01/10/00/00/00/00/01/10/00/00/01/11/11/10/10/01/10/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/11/10/01/1
chr3L17422018.AATAA.PASSAC=27GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/11/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/01/10/00/00/00/10/01/10/00/00/00/00/11/00/01/10/00/01/10/01/10/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/00/00/00/01/10/00/01/01/00/00/00/00/00/00/00/01/11/00/01/11/10/00/01/10/00/00/00/00/0
chr3L17422102.TTTCTTTGTAAGTGGAAACATCTACAATCAGTTCC,TTTC,TTTCTTTGTAAGGGGAAACATCTACAATCAGTTC,TTTGTATGTAAGTGGAAACATCTACAATCAGTTC,TTTGTTTGTAAGGGGAAACATCTACAATCAGTTC,TTTGTTTGTAAGTGAAAACATCTACAATCAGTTC,TTTGTTTGTAAGTGGAAACATCTACAATCAGTTC,TTTGTTTGTAAGTGGAAGCATCTACAATCAGTTC.PASSAC=3,1,1,4,3,6,42,1GT5/50/06/60/70/77/70/07/70/00/00/00/40/04/40/07/70/00/07/77/70/00/00/00/00/00/00/00/07/70/00/00/07/70/00/06/60/00/00/07/77/70/00/00/00/00/00/00/00/00/07/70/00/00/00/00/05/50/00/07/76/60/00/00/00/07/70/00/00/00/07/77/70/00/00/00/04/44/40/00/00/00/07/70/00/00/00/00/00/00/07/77/01/10/08/80/00/07/70/00/07/70/00/00/00/00/00/00/06/72/20/07/70/00/00/00/30/00/00/00/00/00/00/00/00/01/10/00/00/00/01/00/00/07/70/07/70/00/00/00/00/00/70/00/00/00/00/00/00/07/70/00/06/67/70/00/70/07/70/00/00/00/00/06/60/00/00/07/77/77/70/70/07/70/00/00/00/00/07/77/70/00/00/00/00/00/00/00/00/00/00/07/70/00/00/00/00/07/70/00/00/00/77/70/07/5
chr3L17422181.GT.PASSAC=57GT1/10/01/10/10/11/10/01/10/00/00/00/10/01/10/01/10/00/01/11/10/00/00/00/00/00/00/00/01/10/00/00/01/10/00/01/10/00/00/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/01/11/10/00/00/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/11/01/10/01/10/00/01/10/00/01/10/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/00/00/01/10/01/10/00/00/00/00/00/10/00/00/00/00/00/00/01/10/00/01/11/10/00/10/01/10/00/00/00/00/01/10/00/00/01/11/11/11/00/01/10/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/11/10/01/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L17418638TCGGGTGAGTTATAATGCGAAAAAGTATTGGCAGTGAAAATAAACCCATAT
chr3L17419137GAAGAACGCCAAGTACAATGCCGCGCTCATCACTGGCATTCTCGTCCTGGCDmelanogaster-FlyFactorSurvey-CG10267_SOLEXA_5_FBgn0037446
chr3L17422018TGCTCAAATTCTAATATAAAAAATAATATAAAGTTTTTTTCTCGATCTTTA
chr3L17422018TGCTCAAATTCTAATATAAAAAATAATATAAAGTTTTTTTCTCGATCTTTANA
chr3L17422102TTATTGCTATAATCAAATAATAATTTTCTTTGTAAGTGGAAACATCTACAANA
chr3L17422181ATCACAATTCTACGATCGCGATAGGACTGCTCGATACTAATAGTCGATAAG