Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
183915363.57925028035073e-080.1018572186797790.4589403474467290.00692999864459909
183658108.7699447903743e-050.6409440866159730.4631179916061920.738648533373616
183223968.93457520296478e-050.9765555727343870.9682951355207160.835903053564798
183917820.0001259627550767610.1387917523849030.3228032715874110.181862531252389
183807270.000126264614110320.1952688003219110.1689211227330640.167729530167212

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L18391536.TC.PASSAC=154GT0/01/11/10/01/10/01/11/11/11/11/11/01/10/01/11/10/01/10/01/11/10/01/11/10/01/11/11/11/10/00/00/01/11/11/11/11/11/11/10/01/11/11/11/11/10/00/01/11/10/01/11/11/10/00/00/01/10/01/11/11/11/11/11/11/10/01/10/00/01/10/01/11/11/11/11/11/11/10/01/11/11/10/01/10/01/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/10/00/01/11/10/01/11/11/11/10/01/11/11/10/01/11/11/11/11/10/11/11/11/11/10/01/10/00/01/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/01/00/00/01/10/01/11/11/11/11/11/11/10/00/01/01/11/10/11/11/11/01/11/11/11/11/11/11/11/10/01/11/01/11/10/00/01/10/01/10/01/11/11/11/11/10/00/00/00/1
chr3L18365810.AG.PASSAC=100GT0/01/10/00/11/10/01/10/00/00/01/11/11/10/01/11/10/01/10/00/00/00/01/11/10/00/01/10/11/10/00/00/00/01/11/11/11/10/01/10/01/10/01/11/10/00/00/01/10/01/11/11/11/10/00/00/00/00/00/01/10/00/01/11/10/00/01/10/00/00/00/01/11/11/11/01/11/11/11/10/01/11/11/11/00/01/11/11/10/01/11/10/00/01/10/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/11/11/11/10/01/10/00/01/10/00/01/11/10/01/10/01/10/00/00/00/00/01/11/11/11/11/10/01/00/01/10/00/00/01/10/01/11/01/00/01/10/01/11/10/00/00/01/11/10/00/00/00/10/00/01/10/00/01/10/00/01/11/11/11/11/10/00/01/10/01/10/00/01/11/11/11/11/10/01/11/11/10/00/11/10/00/0
chr3L18322396.ACATGGAAACTTTTATTTTA,AAATGGAAACTTTGATTTA,AAATGGAAACTTTTATTTT,ACATGGAAACTTTAATTTT,ACATGGAAACTTTGATTTA,ACATGGAAACTTTTATTTA.PASSAC=1,77,1,12,1,1GT0/00/02/20/02/10/00/04/40/00/04/00/06/60/00/22/20/04/42/20/00/00/00/02/20/02/22/20/22/20/00/00/00/02/22/20/02/24/42/20/02/20/04/42/22/22/20/04/40/02/22/24/40/00/00/00/00/00/00/02/20/02/24/40/02/20/02/24/40/00/00/00/00/02/22/00/02/22/22/20/02/20/00/00/00/00/02/22/22/20/02/20/00/00/02/20/02/20/00/00/02/20/00/00/00/00/00/00/00/00/00/00/00/00/00/02/22/22/22/20/02/20/00/04/40/00/02/20/00/02/23/50/04/20/00/00/00/00/00/00/02/22/22/22/22/22/22/20/00/02/22/20/00/00/02/02/00/00/00/00/00/02/20/00/02/22/22/20/00/00/02/00/00/00/00/00/00/04/40/00/02/20/02/22/20/00/00/02/00/02/20/02/22/22/22/22/22/22/20/02/22/00/22/20/00/0
chr3L18391782.GA,AT,T.PASSAC=1,26,4GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/00/00/00/00/02/22/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/22/22/00/00/00/00/00/00/00/00/30/02/20/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/30/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/00/02/20/00/00/00/00/00/00/30/00/00/20/00/00/00/02/00/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/00/00/00/20/02/00/00/02/20/00/00/00/00/00/00/02/02/00/20/00/02/00/00/00/20/00/00/00/00/00/00/00/30/00/00/00/00/00/02/00/00/00/00/00/00/00/00/00/02/22/20/00/2
chr3L18391782.GGT.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L18380727.TC.PASSAC=30GT0/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/11/10/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/10/01/10/00/01/10/00/00/00/00/00/00/01/11/10/10/01/11/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/01/11/10/01/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L18391536TTCGAGATGCGTTCGCTGCGATGGTTGCTTTTCAACTGAATATATTGAGTA
chr3L18365810AGAACTCCTCTGGCTGGGGTTTTTAAAGGCCCATTGAGAAGGCCCTCGGCT
chr3L18322396GAATAGTTGTAAGTAATCTTCTAAACATGGAAACTTTTATTTTCATTTCAANA
chr3L18391782CACCTTGCGCCTGTTGCCAAGCGTGTTTTTGTATGAGGTTGTGTTGTTGTTDmelanogaster-FlyFactorSurvey-CG10267_SOLEXA_5_FBgn0037446
chr3L18391782CACCTTGCGCCTGTTGCCAAGCGTGTTTTTGTATGAGGTTGTGTTGTTGTTDmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L18380727CAATATTTTCTCAGTGGTTCTCTTTTCTTGGCGATATCACCAGCTGCGTTA