Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
38008784.43261556761695e-100.3186610325726960.3035541515225270.00343844641632455
38008954.63197590926581e-090.07059010881346020.5388166020320580.0110746912118736
37592021.20803910968214e-050.5009625363753310.2526709826404130.213771154787344
37960300.245966805409041.57683654353003e-050.008646606747181450.382480761172742
38007593.09721401910028e-050.09086272883194480.1171211815622780.935167722682451

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L3800878.TA.PASSAC=82GT0/01/10/00/00/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/11/10/00/00/00/00/00/00/00/01/11/10/01/10/01/11/10/00/00/00/01/11/10/01/11/11/10/00/01/11/11/11/10/00/00/00/01/11/10/00/00/00/00/01/10/01/11/10/01/10/01/11/10/01/11/10/00/00/00/00/01/11/10/01/10/01/10/00/01/11/10/00/01/11/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/00/01/11/11/11/11/10/00/01/10/00/00/00/00/00/01/00/01/11/10/00/00/01/11/10/00/00/01/11/11/11/11/11/10/00/01/10/01/10/00/01/11/11/10/01/11/11/10/00/00/00/00/00/00/01/11/10/00/00/01/11/11/10/01/10/00/00/00/01/10/00/00/00/01/11/10/01/11/11/11/11/0
chr3L3800895.CG.PASSAC=67GT0/00/00/00/00/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/01/11/10/00/00/01/11/10/00/00/00/01/11/10/01/11/11/10/00/01/11/11/11/10/00/00/00/01/11/10/00/00/00/00/01/10/01/11/10/01/10/01/11/10/01/11/10/00/00/00/00/01/11/10/01/10/01/10/00/01/11/10/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/01/11/11/10/00/01/10/00/00/00/00/00/01/00/01/11/10/00/00/01/11/10/00/00/00/01/11/11/11/11/10/00/01/10/01/10/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/01/11/10/00/00/00/00/00/00/01/10/00/00/00/01/11/10/00/01/11/10/01/0
chr3L3759202.AG.PASSAC=170GT1/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/10/01/10/00/01/11/10/01/11/10/01/11/11/11/11/11/11/11/11/11/10/01/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/11/11/11/11/10/01/11/11/11/11/11/10/01/11/10/01/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/10/00/01/11/11/10/01/11/11/11/11/11/11/11/10/00/00/01/11/11/11/11/11/11/11/11/11/11/10/01/11/11/10/01/10/01/11/11/10/01/10/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/10/1
chr3L3796030.GT.PASSAC=5GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/10/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L3796030.GTG,GAGT,GG.PASSAC=6,22,23GT0/00/00/00/00/00/00/00/00/00/00/02/00/00/00/03/30/00/00/00/00/00/00/00/00/00/00/00/02/02/20/02/22/00/00/01/10/02/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/00/00/02/02/22/00/00/00/02/22/20/00/00/00/00/02/00/00/00/30/00/30/00/00/00/00/30/00/02/00/00/30/00/00/01/10/01/30/30/00/30/20/00/00/30/01/00/00/00/30/00/00/02/00/00/30/00/03/30/01/30/00/00/00/30/30/00/02/02/20/00/00/30/00/30/30/00/00/00/32/00/00/30/00/00/00/00/00/00/00/30/00/00/00/00/00/00/30/00/00/00/00/00/00/00/00/00/00/00/00/02/01/10/00/00/00/00/00/00/00/02/20/00/30/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L3800759.TC.PASSAC=22GT0/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/01/10/00/00/00/00/00/01/10/01/11/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/01/11/10/01/11/10/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L3800878AGTATAAATCACTAATAATCCAGCTGATTTCGCAATGATTTCAGCGAGTCADmelanogaster-FlyFactorSurvey-crp_SANGER_10_FBgn0001994
chr3L3800895ATCCAGCTGATTTCGCAATGATTTCAGCGAGTCAAAGATAATGCAAGAGGT
chr3L3759202TACTATATTTTACGTGATTGTGCAATTGTTGTGGTTTGGTGTTTGTTGTATDmelanogaster-FlyFactorSurvey-Aef1_SANGER_5_FBgn0005694 , Dmelanogaster-FlyFactorSurvey-Xrp1_CG6272_SANGER_5_FBgn0036126 , Dmelanogaster-FlyFactorSurvey-Xrp1_CG6272_SANGER_5_FBgn0261113
chr3L3796030ATGAGTTGAGTGCGGATGAGAAGGGTGGGGAGAGGGGGAAGTGGTGGACAGDmelanogaster-FlyFactorSurvey-CG7368_SANGER_5_FBgn0036179
chr3L3796030ATGAGTTGAGTGCGGATGAGAAGGGTGGGGAGAGGGGGAAGTGGTGGACAGDmelanogaster-FlyFactorSurvey-CG7368_SANGER_5_FBgn0036179 , Dmelanogaster-FlyFactorSurvey-CG7368_SOLEXA_2.5_FBgn0036179 , Dmelanogaster-FlyFactorSurvey-crol_F7.16_SANGER_5_FBgn0020309 , Dmelanogaster-FlyFactorSurvey-l(3)neo38_SANGER_2.5_FBgn0086910
chr3L3800759TAAAATCGTTAGAAATAAATTTTCTTTAGAAAATACACACTGAATTGTTTA