Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
39026187.15898982885635e-090.4378436404062370.513301829298370.0586718690672621
39028162.04240351577519e-080.2314856728294010.4253082274349540.030751703089216
39023712.58648498709583e-070.3698333968608490.7158346662603250.0333063227557143
39030376.4359351008963e-050.6562597154924820.9873003524846840.544184970582536
39020337.91231081270823e-050.801599954956850.1640324463336740.0546029551229844

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L3902618.GA.PASSAC=111GT0/01/10/01/00/00/01/11/10/01/11/11/10/00/01/10/01/11/11/11/11/10/01/11/10/01/10/00/01/11/10/00/01/11/11/10/01/10/01/11/11/10/01/10/00/01/11/10/00/01/10/00/01/10/00/00/01/10/00/01/10/00/00/01/10/00/00/01/11/11/00/00/00/01/11/11/10/00/01/11/11/01/10/01/11/10/00/01/11/11/10/01/10/01/11/11/10/00/00/00/01/10/01/10/00/01/11/11/11/10/00/01/10/01/11/11/11/11/10/01/10/00/01/11/11/11/10/00/00/00/00/00/01/10/00/01/11/10/00/01/00/01/11/11/11/10/01/11/11/11/10/01/11/11/11/10/01/11/10/01/11/11/11/11/11/11/10/01/10/00/00/01/11/01/11/11/11/10/01/10/01/11/10/01/10/00/00/00/00/01/11/11/11/10/00/00/00/01/10/01/10/00/00/00/00/0
chr3L3902816.AG.PASSAC=113GT0/01/10/01/00/00/01/11/10/01/11/11/10/00/01/10/01/11/11/11/11/10/01/11/10/01/10/00/01/11/10/00/01/11/11/10/01/10/01/10/01/10/01/10/00/01/11/10/00/01/10/01/11/10/00/00/01/11/10/01/10/00/00/01/10/00/00/01/11/11/10/00/00/01/11/11/10/00/01/11/01/11/10/01/11/10/00/01/11/11/10/01/10/01/11/11/10/00/00/00/01/10/01/10/00/01/11/11/11/10/00/01/10/01/11/11/11/11/00/01/10/01/11/11/11/11/10/00/00/00/00/00/01/10/00/01/11/10/00/01/00/01/11/11/11/10/01/11/11/11/10/01/11/11/11/10/01/11/10/01/11/11/11/11/11/11/10/01/10/00/00/01/11/11/11/11/11/10/01/10/01/11/10/01/10/00/00/00/00/01/11/11/11/10/00/00/00/01/10/01/10/00/00/00/00/0
chr3L3902371.GA.PASSAC=118GT0/01/10/01/10/01/11/11/10/01/11/11/10/00/01/10/01/10/01/11/11/10/01/11/10/01/10/00/11/11/10/00/01/11/11/10/01/10/01/11/11/10/01/10/00/01/11/10/00/01/10/00/01/10/00/00/01/10/00/01/10/00/01/11/10/00/01/11/11/11/10/00/00/01/11/11/10/00/01/11/11/11/10/01/11/10/00/01/11/11/10/01/10/01/11/11/10/00/00/00/01/10/01/10/00/01/11/11/11/11/10/01/10/01/11/11/11/11/10/01/10/00/01/11/11/11/10/01/10/00/00/00/01/10/01/11/11/10/00/01/10/01/11/11/11/10/01/11/11/11/10/01/11/11/11/10/01/11/10/01/11/11/11/11/11/11/10/01/10/00/00/01/11/11/11/11/11/10/01/10/01/11/10/01/11/10/00/00/00/01/11/11/11/10/00/00/00/01/10/01/10/00/00/00/00/0
chr3L3903037.GA.PASSAC=159GT1/11/10/01/00/00/01/11/10/01/11/11/10/01/11/10/01/11/10/01/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/10/00/00/01/11/11/10/00/01/11/11/10/01/10/01/11/11/11/11/11/11/11/11/10/00/00/01/11/10/00/01/11/11/10/00/00/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/10/00/00/01/11/11/10/01/11/11/11/11/10/00/01/10/01/11/11/11/11/10/01/11/11/11/11/11/11/10/00/01/11/10/01/11/11/10/01/11/10/01/11/11/11/11/11/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/10/01/11/11/11/10/01/11/11/10/01/11/11/11/10/01/10/01/11/11/11/11/11/10/01/11/1
chr3L3902033.GTATGTATACACAGCTGG,GTATATATACACAGCTG.PASSAC=12,84GT0/00/00/02/00/00/02/21/00/02/22/21/00/00/00/00/02/22/22/21/22/20/02/20/00/02/20/00/02/22/20/00/00/02/22/20/00/00/01/12/20/00/00/00/00/02/22/20/00/02/20/02/22/20/00/00/02/22/20/02/20/00/00/02/20/00/02/20/02/20/00/00/00/00/00/22/20/00/02/22/20/02/20/02/22/20/00/02/22/22/20/00/00/01/00/01/10/00/00/00/02/20/00/00/00/02/22/22/22/20/00/02/20/02/22/22/22/21/00/02/20/02/22/22/21/02/20/00/00/00/00/00/00/00/00/00/02/20/00/00/00/02/22/22/22/20/01/02/22/22/20/02/21/02/22/20/01/02/20/02/22/22/22/22/22/22/20/02/20/00/00/02/22/21/02/22/20/00/02/20/00/00/00/02/22/20/00/00/00/00/02/22/22/20/00/00/00/02/20/02/20/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L3902618TTCGCTGATTGCGCTTTACTTTCTGCTTGTACTTGCTGCTGCAAATGTCAA
chr3L3902816GTATTAAAATTTTTTATGATTTCTATGTATCACTTTTTTTTTGTGTTTTTCDmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr3L3902371TTGATGCCAATTCATTGGGAAAACGAGATGCGTGGCTGCCAATTTCTTATT
chr3L3903037AGGCTTGTTAGGATTGGTGTTTTGGAATTTAAGACCCTTGTTAGTTTGCTT
chr3L3902033TTTTCGTGTTGCGAGTGTGTGCATGTATGTATACACAGCTGAAATGCATGCNA