Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
41605601.52070280607298e-120.01627401814067830.1316936226329120.625144302809967
41600274.69063424638262e-060.3543200692466930.1322532474911550.166460241523159
41614594.95628367043027e-060.04770375524857690.9566637276062450.0709066618157904
41602571.77607953543876e-050.06318605827243630.607098015064530.15947657457059
41599452.73718819420724e-050.605124394141720.07776935242700860.0603547532915008

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L4160560.GA.PASSAC=119GT0/01/10/01/01/11/10/00/01/11/10/01/11/10/01/11/11/11/11/10/01/10/00/00/01/10/01/10/10/01/10/01/11/11/11/11/11/11/10/01/10/00/00/00/01/10/01/11/11/10/00/01/10/01/11/11/11/11/10/00/01/11/10/01/11/10/01/11/10/00/00/01/10/01/11/10/01/11/11/01/11/11/11/10/01/00/00/00/01/10/01/11/11/11/10/01/10/00/01/11/10/00/00/01/11/11/10/01/11/10/01/11/11/11/11/10/01/11/10/01/11/11/10/01/11/11/11/10/01/11/11/10/01/11/10/00/00/01/11/11/00/01/10/00/00/00/00/01/00/00/00/00/00/00/01/01/11/10/00/00/01/00/01/11/10/01/11/11/11/11/01/11/10/01/10/00/00/00/00/01/10/00/01/11/11/11/10/01/10/00/01/10/01/11/10/01/10/00/01/10/01/11/11/10/00/1
chr3L4160027.AG.PASSAC=95GT0/01/11/11/00/01/10/00/01/10/00/00/01/10/01/10/01/11/10/00/01/10/00/01/11/10/01/11/01/10/00/00/01/11/11/11/11/11/10/01/10/00/00/00/00/00/01/10/01/10/00/01/10/01/11/11/11/10/00/00/01/11/10/00/01/11/11/10/00/00/00/00/00/01/11/00/01/11/10/01/11/11/10/00/00/00/00/00/01/10/00/00/01/10/01/11/10/00/01/11/10/00/00/01/11/11/10/01/11/10/01/11/10/00/01/10/01/11/10/01/11/11/10/01/11/10/01/11/10/01/11/10/01/11/10/00/01/11/11/11/10/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/11/10/00/00/01/11/11/11/10/00/00/01/10/00/00/01/10/00/00/00/01/10/00/01/10/00/01/10/01/10/00/00/00/01/10/00/00/01/00/01/10/00/01/10/00/01/11/11/10/1
chr3L4161459.CT,TC,TTC.PASSAC=31,45,36GT2/20/03/30/20/00/02/23/30/02/23/02/03/32/20/00/00/00/00/03/30/03/30/02/00/01/10/00/00/00/01/10/00/03/30/00/00/01/11/10/02/02/00/02/20/02/20/00/03/32/22/20/01/10/00/00/00/00/00/01/10/00/02/20/00/00/00/01/12/20/22/22/21/10/00/00/03/33/30/00/00/01/10/02/00/01/12/00/00/03/30/00/20/00/03/00/02/01/00/00/03/02/21/10/00/00/02/20/03/02/20/00/01/10/00/02/20/00/21/10/00/00/01/10/00/01/00/03/20/00/01/01/10/20/01/13/01/12/00/20/02/30/01/11/10/01/11/10/02/22/22/20/03/31/10/00/00/02/02/23/30/01/13/30/03/30/03/33/33/33/03/00/23/30/02/22/21/12/23/30/01/11/10/00/00/03/02/03/30/02/23/33/30/00/03/01/10/02/20/02/23/00/03/33/31/0
chr3L4160257.GTAACACAG.PASSAC=66GT1/10/01/10/00/00/01/11/10/00/01/10/00/01/10/00/00/00/00/01/10/01/10/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/10/01/11/01/11/11/01/10/00/00/01/11/10/01/10/00/00/00/00/01/01/10/00/00/00/00/00/00/01/11/11/00/00/01/00/00/10/00/00/00/00/00/00/01/00/00/01/11/10/00/01/00/00/00/00/01/10/00/00/00/00/01/01/11/10/00/00/01/10/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/01/10/01/00/00/00/00/00/00/00/01/00/00/00/00/01/10/01/10/00/00/01/10/00/01/11/10/01/00/00/00/00/01/11/11/10/01/10/00/01/10/00/00/00/00/00/00/01/11/11/11/11/11/10/00/01/11/10/00/00/00/01/10/01/10/00/01/00/00/00/00/00/00/00/01/10/00/00/01/01/0
chr3L4159945.CT.PASSAC=88GT0/01/11/11/00/01/10/00/01/00/00/00/01/10/01/10/01/11/10/00/01/10/00/01/11/10/01/11/01/10/00/00/01/11/11/11/11/11/10/01/10/00/00/00/00/00/01/10/01/10/00/01/10/01/11/11/11/10/00/00/01/11/10/00/01/11/11/10/00/00/00/00/00/01/11/00/00/00/00/01/11/11/10/00/00/00/00/00/01/10/00/00/01/10/01/11/10/00/01/11/10/00/00/01/11/11/00/01/11/00/01/11/10/00/01/10/01/11/10/01/11/11/10/01/11/10/01/11/10/01/11/10/01/11/10/00/01/11/11/11/10/01/11/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/00/00/01/10/00/00/00/01/10/00/01/10/00/01/10/01/10/00/00/00/01/10/00/00/01/10/01/10/00/00/00/00/00/01/11/10/1
chr3L4159945.CTTTC.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L4160560TGCGGATTGGCTGTGTCCTTTGCTGCTGGTGCTGGCAGCTGGCGATGGACTDmelanogaster-FlyFactorSurvey-bowl_SANGER_5_FBgn0004893 , Dmelanogaster-FlyFactorSurvey-odd_NBT_1.5_FBgn0002985 , Dmelanogaster-FlyFactorSurvey-odd_NBT_2.5_FBgn0002985 , Dmelanogaster-FlyFactorSurvey-odd_NBT_5_FBgn0002985 , Dmelanogaster-FlyFactorSurvey-sob_SANGER_10_FBgn0004892 , Dmelanogaster-FlyFactorSurvey-sob_SOLEXA_5_FBgn0004892 , Dmelanogaster-JASPAR_CORE-odd-MA0454.1
chr3L4160027AAACTATATTCAATTACCATCAACATAAACCATTTTGAAAGCCTTTAGAAC
chr3L4161459AATCATTATGCAACTGCATTTTTTCGTACTAGAAAAGAAAAATCTGCTCTCDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L4160257CACAACTGTACTGTGTTCACTAGTGTAACACAGCACAGTAATATCCTTGGANA
chr3L4159945CCAATGACGAAAGGATGTGCATGGCTTTCGGAGATAATTAGAACCTGTATC
chr3L4159945CCAATGACGAAAGGATGTGCATGGCTTTCGGAGATAATTAGAACCTGTATCNA