Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
55927966.13369378505723e-070.6450742625552880.1500476124676050.0732034294417028
55927986.13369378505723e-070.6450742625552880.1500476124676050.0732034294417028
55928436.13369378505723e-070.6450742625552880.1500476124676050.0732034294417028
56309860.4232910727099430.006644260390452430.0001177248013598490.231966530057831
56177110.0001537600247994980.602661225684760.6668619941553050.987690390821436

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L5592796.CA.PASSAC=153GT1/10/01/10/11/11/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/11/10/00/00/01/10/01/11/11/10/00/01/11/10/01/10/01/11/11/11/10/01/11/11/00/01/10/00/01/11/11/11/11/11/10/00/00/01/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/10/01/10/00/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/10/00/01/11/11/11/10/01/11/11/10/01/11/11/10/01/11/11/11/11/10/00/01/10/10/00/00/00/01/11/11/11/10/00/01/10/01/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/00/00/01/11/11/10/00/00/01/10/00/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/0
chr3L5592798.AG.PASSAC=153GT1/10/01/10/11/11/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/11/10/00/00/01/10/01/11/11/10/00/01/11/10/01/10/01/11/11/11/10/01/11/11/00/01/10/00/01/11/11/11/11/11/10/00/00/01/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/10/01/10/00/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/10/00/01/11/11/11/10/01/11/11/10/01/11/11/10/01/11/11/11/11/10/00/01/10/10/00/00/00/01/11/11/11/10/00/01/10/01/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/00/00/01/11/11/10/00/00/01/10/00/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/0
chr3L5592843.TA.PASSAC=153GT1/10/01/10/11/11/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/11/11/11/10/00/00/01/10/01/11/11/10/00/01/11/10/01/10/01/11/11/11/10/01/11/11/10/01/10/00/01/01/11/11/11/11/10/00/00/01/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/10/01/10/00/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/10/01/11/10/00/01/11/11/11/10/01/11/11/10/01/11/11/10/01/11/11/11/11/10/00/01/10/10/00/00/00/01/11/11/11/10/00/01/10/01/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/10/00/00/01/11/11/10/00/00/01/10/00/01/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/0
chr3L5630986.TG.PASSAC=1GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L5630986.TGTTGTTGTT,TGTGGTTGT,TGTT,TGTTGT,TGTTGTT,TGTTGTTGTTGTTTTT,TGTTGTTTT.PASSAC=4,1,1,4,2,3,10GT0/00/00/00/00/00/00/00/00/00/00/00/04/40/00/00/00/00/00/00/00/00/00/00/00/00/00/70/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/60/00/00/00/00/00/00/00/00/00/04/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/70/00/00/00/00/00/00/00/00/00/00/00/00/70/01/00/00/00/70/00/00/00/00/00/00/00/00/00/00/00/72/20/00/70/00/00/00/00/00/70/00/00/06/70/10/05/00/60/00/00/00/00/00/00/01/00/00/00/00/00/05/00/70/00/00/00/03/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/04/00/00/00/00/00/00/00/00/04/00/00/70/00/00/00/00/00/00/00/00/00/0
chr3L5617711.CT.PASSAC=45GT0/00/00/00/00/01/11/10/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/11/10/01/10/00/00/00/00/01/10/00/01/10/01/10/00/01/10/01/10/00/01/10/00/00/00/00/01/10/00/00/00/00/01/11/11/10/00/10/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/01/10/01/10/01/11/10/00/00/00/00/00/00/01/10/01/11/11/10/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/01/10/00/00/01/10/00/00/01/10/00/01/10/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L5592796TTCTCTTCAGATCGGACTGAGATCCAAAATTCGAATTCGGCTTTTATAAGC
chr3L5592798CTCTTCAGATCGGACTGAGATCCAAAATTCGAATTCGGCTTTTATAAGCTG
chr3L5592843AAGCTGAAAAACTCGAGAGCTACGTTTTAATATGCATAGAAAATATACAAA
chr3L5630986CCTTATTTTTGTTGTACTTGTTGTTGTTGTTGTTTTTTTTCACTTTGCCCTDmelanogaster-FlyFactorSurvey-Aef1_FlyReg_FBgn0005694 , Dmelanogaster-FlyFactorSurvey-Aef1_SANGER_5_FBgn0005694 , Dmelanogaster-FlyFactorSurvey-CG4360_F1.3_SANGER_2.5_FBgn0038787 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr3L5630986CCTTATTTTTGTTGTACTTGTTGTTGTTGTTGTTTTTTTTCACTTTGCCCTNA
chr3L5617711TTATAAACTTTTTCGATGCCATCGCCGGCAGCAGAACGGAATTGGCCAGTA