Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
75981211.52180781698798e-090.3519770449084760.02199858431791310.0144218685398251
75752942.95776547554272e-050.3898621207203670.782457608492820.476262293791886
76268400.0002046059305040790.7682419605597970.2755159989708960.149638795877581
76571030.10638167953020.07652284595601070.4284078927475470.000239579181999229
75994700.2236367474249310.004090489205706450.000250264836202460.826209493961404

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L7598121.GGC.PASSAC=170GT1/11/11/10/11/01/11/11/11/11/11/01/11/11/11/11/11/11/11/11/11/11/11/01/10/00/01/10/11/10/01/11/11/11/11/11/11/11/01/11/11/11/01/11/11/00/01/11/10/00/01/11/11/11/01/11/11/11/11/11/10/11/11/11/00/01/11/10/01/11/10/00/01/11/01/11/11/10/01/11/11/11/11/11/01/11/11/11/11/11/11/10/01/11/10/01/11/00/01/11/11/01/11/11/11/01/10/01/11/01/10/01/11/10/01/10/01/11/11/11/11/11/01/11/11/10/00/01/00/01/11/11/11/01/11/11/00/01/10/01/00/01/01/11/11/11/10/01/11/11/11/10/01/11/11/11/11/11/01/11/11/11/01/11/11/11/11/11/11/11/01/01/11/11/10/00/01/11/11/11/11/11/11/10/00/01/11/10/11/10/01/11/10/00/01/10/01/11/11/11/11/01/11/10/01/0
chr3L7575293.TTT.PASSAC=30GT0/00/01/00/10/00/00/01/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/01/10/00/01/10/00/00/00/10/00/00/00/00/01/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/01/00/00/00/00/01/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/01/01/10/00/00/00/00/00/00/10/10/00/00/00/00/00/00/01/00/01/00/01/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/01/00/00/10/00/01/10/00/00/00/00/00/00/00/00/01/00/00/00/00/0
chr3L7575294.TTT,TTT.PASSAC=32,21GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/01/00/20/00/00/00/02/20/01/00/10/00/00/00/00/00/00/00/00/00/00/00/00/11/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/01/10/20/01/11/20/00/00/00/00/00/00/00/00/01/00/21/00/00/00/00/01/00/00/02/00/20/11/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/02/00/01/00/00/00/02/00/00/00/00/00/00/00/00/00/00/01/10/20/00/00/00/00/00/00/00/01/00/02/00/10/00/00/00/00/00/00/00/00/01/20/00/00/10/21/20/00/00/01/00/11/00/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/20/00/00/00/11/21/00/00/01/20/00/20/00/20/00/00/00/00/00/00/00/0
chr3L7626840.ATCGACTTGGGGCCGAGTTTTACTAAATCAATTAATTAATTTATGGCCAGCCTGGGCGGCGGGGCAATCGTTGAGAAACAATCTGCCGATCGGCTTTATGGAGCCAAAAAGATCGACTTGGGGCCGAGTTTTACTAAATCAATTAATTAATTTATGGCCAGCCTGGGCGGCGGGGCAATCGTTGAGAAACAATCTGCCGATCGGCTTTATGGAGCTAAAAAG,TCGAATCGAA.PASSAC=146,2GT1/11/11/10/00/01/11/11/11/11/11/11/11/10/00/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/00/00/01/10/01/11/11/10/01/11/10/01/11/11/10/01/11/10/01/11/11/11/10/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/10/00/01/11/11/10/00/01/11/11/01/10/01/11/11/11/11/11/11/11/11/10/00/01/10/01/10/00/01/11/10/00/01/11/11/11/11/11/11/11/10/01/11/10/01/10/00/01/11/10/01/11/11/11/10/00/01/10/01/11/11/11/11/11/11/11/11/11/11/10/01/11/11/10/02/20/01/11/10/01/11/10/00/01/12/21/01/11/11/10/01/11/11/11/11/11/11/11/11/11/11/10/01/10/00/00/00/01/10/00/01/11/10/00/01/11/11/11/01/10/01/10/00/00/00/00/01/10/01/11/11/10/01/11/11/0
chr3L7657103.TG.PASSAC=42GT0/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/01/00/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/01/10/11/11/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/10/00/00/00/00/00/00/00/01/10/01/10/00/00/01/10/00/00/01/00/00/01/10/00/00/01/10/01/10/00/00/01/10/01/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/10/01/10/00/01/10/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/01/00/00/01/10/00/00/01/10/01/11/10/00/01/10/00/00/00/01/0
chr3L7599470.TTTTTTTT,TTT,TTTT,TTTTT.PASSAC=5,10,115,94GT4/43/34/40/34/03/43/03/43/33/44/04/44/43/24/02/40/04/04/03/03/44/44/00/11/13/04/43/03/23/30/03/34/44/03/34/04/03/02/23/04/03/03/33/04/03/40/04/03/01/13/03/04/03/44/04/04/03/04/00/40/03/43/43/03/44/03/44/04/04/00/00/03/03/03/44/03/33/33/40/43/43/10/00/03/03/03/23/43/04/03/12/43/43/03/04/43/03/03/03/33/04/00/43/44/03/03/03/04/04/00/43/03/02/04/03/03/33/43/42/23/34/03/03/43/22/43/40/03/03/03/43/04/03/04/33/00/04/43/03/03/43/03/33/33/33/00/03/34/03/03/30/43/03/03/03/40/44/00/03/04/44/04/03/33/33/34/43/04/04/04/03/04/03/03/00/44/04/03/33/03/03/33/00/00/04/04/04/03/43/34/44/40/00/03/00/03/03/03/03/43/03/04/43/33/4

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L7598121CCGAAGCACTGTTAACGGGTCTGTGTTCGGATTTTCTGAAGTCAGTTGAAC
chr3L7575293TATTGTCATTGTTTCTCTTTTTTTTTGTTATTTTTTTTTTTCTTTTGTGGTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L7575294ATTGTCATTGTTTCTCTTTTTTTTTGTTATTTTTTTTTTTCTTTTGTGGTGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3L7626840TATCGGCATCGGTTAGCAGTGAAAATCGACTTGGGGCCGAGTTTTACTAAANA
chr3L7657103ATTCAGCTCCTTACTGTTGCTGTTTGCCACTGGAACGGCCGGCGGTTCCAGDmelanogaster-FlyFactorSurvey-Aef1_SANGER_5_FBgn0005694 , Dmelanogaster-FlyFactorSurvey-CG4360_F1.3_SANGER_2.5_FBgn0038787
chr3L7599470GAGTTGGCATTTTTTATATTTTTTTTTTTTGTTTTGTTTTTTATATACCCTNA