Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
89697191.51520478451596e-110.6297556291751330.3906450641509190.641931124640655
89676641.33690994324164e-100.4935769305466410.5004393038001690.375770478283191
89601783.84937240046644e-100.6659525245303020.6512067008144590.743050613839061
89545711.89741665254121e-090.8630273661032130.8732267978693430.960796172189591
89545822.91855409229342e-090.6860741824405470.6390461107410690.651591682281363

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3L8969719.AG.PASSAC=53GT0/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/01/11/10/00/00/00/00/01/11/10/00/01/10/00/00/01/10/01/10/00/01/10/00/00/00/00/01/10/00/00/00/00/00/01/10/01/11/11/11/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/11/10/00/00/01/10/00/01/11/10/00/00/00/01/11/10/00/00/01/10/01/11/10/00/01/10/01/10/00/00/00/01/11/11/10/00/00/00/01/10/01/10/00/00/00/00/00/01/11/10/00/00/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/01/11/10/00/00/00/00/01/10/01/01/10/01/10/00/01/10/00/00/01/10/01/11/0
chr3L8967664.TC,G.PASSAC=13,48GT0/00/00/01/20/00/00/00/00/00/00/00/00/00/00/00/00/00/02/22/22/20/00/00/00/02/21/10/10/00/00/00/02/22/20/00/02/20/00/00/02/20/02/20/00/02/20/00/00/00/00/02/20/00/00/00/00/00/02/20/02/22/22/22/20/00/00/02/20/00/00/00/00/00/00/10/00/00/02/20/00/02/20/00/02/22/20/00/00/01/10/00/02/21/10/00/00/02/22/22/20/00/00/02/20/02/22/20/00/02/20/01/10/00/00/00/01/12/22/20/00/02/20/02/20/01/10/00/00/00/00/00/02/22/20/00/00/00/00/02/20/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/00/00/00/00/00/00/02/20/00/02/22/20/00/00/00/00/02/20/02/02/20/00/00/00/02/20/01/10/02/00/01/12/1
chr3L8960178.AC.PASSAC=54GT0/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/01/10/00/00/00/00/01/11/10/00/01/10/00/00/01/10/00/00/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/00/01/11/11/10/00/00/00/01/10/00/00/00/00/00/00/01/10/00/01/10/00/01/10/00/01/11/10/00/00/01/10/00/00/01/10/00/00/01/11/11/10/00/00/01/10/01/11/10/00/01/10/01/11/10/00/00/01/11/11/10/00/01/10/00/00/01/10/00/00/00/00/00/01/11/10/00/00/00/00/01/10/10/01/10/00/00/00/00/01/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/11/11/10/00/00/00/00/00/00/00/11/10/00/00/00/00/00/00/00/01/10/01/11/0
chr3L8954571.CA.PASSAC=8GT0/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3L8954571.CCCA.PASSAC=57GT0/00/00/01/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/11/10/00/00/00/00/00/01/10/00/00/00/00/01/11/10/00/01/10/00/00/01/10/00/10/00/01/11/10/00/00/00/01/00/00/00/00/00/00/00/00/01/01/01/11/10/00/00/01/10/00/00/00/00/00/00/11/10/00/00/00/00/01/10/00/01/11/10/00/00/01/10/00/00/01/10/00/00/00/01/01/10/00/00/01/10/01/01/10/00/01/10/01/01/10/00/00/01/11/11/00/00/01/00/00/10/01/00/00/00/00/00/00/01/01/10/00/00/00/00/01/10/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/01/11/10/00/00/01/00/00/00/01/00/00/00/00/00/01/10/00/00/01/00/00/00/00/00/00/00/00/11/10/00/00/00/01/10/00/00/01/10/01/11/0
chr3L8954582.AT.PASSAC=57GT0/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/01/11/10/00/00/00/00/00/01/10/00/00/00/00/01/11/10/00/01/10/00/00/01/10/01/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/00/01/11/11/11/10/00/00/01/10/00/00/00/00/00/01/01/10/00/00/00/00/01/10/00/01/11/10/00/00/01/10/00/00/01/10/00/00/00/01/11/10/00/00/01/10/01/11/10/00/01/10/01/11/10/00/00/01/11/11/10/00/01/10/01/10/01/10/00/00/00/00/00/01/11/10/00/00/00/00/01/10/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/01/11/10/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/10/01/11/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3L8969719TTTGGAGGACGACGCCACGTACCAAAGCGAGGTGGAGAACCTGGCCATCAC
chr3L8967664AACCTCAAAGCGTGGCCAAAACAATGGGTTTCCACCATAAATTTCTATTGTDmelanogaster-FlyFactorSurvey-D_NAR_FBgn0000411 , Dmelanogaster-FlyFactorSurvey-Sox15_SANGER_5_FBgn0005613 , Dmelanogaster-JASPAR_CORE-D-MA00445.1
chr3L8960178ATCCGAGGTTTTCCACGAAAACTCATATTTTACAACGAGGCAAGCCAAACT
chr3L8954571ACTCTTTGACCTACAATAAAAAACCAATAAAAATAATGTCGCATGGAATCADmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-JASPAR_2014-CAD-MA0216.2 , Dmelanogaster-JASPAR_CORE-br_Z1-MA0010.1
chr3L8954571ACTCTTTGACCTACAATAAAAAACCAATAAAAATAATGTCGCATGGAATCADmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-JASPAR_2014-CAD-MA0216.2
chr3L8954582TACAATAAAAAACCAATAAAAATAATGTCGCATGGAATCAAAACTTTATAGDmelanogaster-FlyFactorSurvey-CG3838_SANGER_5_FBgn0032130