Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
126169841.01953967875778e-050.6173489110791120.9027536942252450.806972440215361
126025191.04099137020559e-050.9271729251675570.9367473327130590.967663480224707
126344942.57540999733696e-050.4399406264341620.8615263491002940.461308165242876
125954513.46369816566455e-050.7413949084728790.3737551010267920.100119776338661
126017738.68302224731252e-050.7214829810129070.9131166835461880.445827803194578

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R12616984.CT.PASSAC=179GT1/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/10/00/00/01/10/01/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/10/01/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/10/01/10/01/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/10/00/01/11/10/11/11/11/11/11/10/01/11/11/11/11/11/11/11/10/01/11/10/01/11/10/01/11/11/11/10/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/10/11/11/10/01/11/11/11/11/10/11/11/11/11/11/11/11/1
chr3R12602518.AAA.PASSAC=21GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/01/00/00/00/10/00/01/10/00/00/00/00/00/10/00/00/10/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/11/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/10/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/0
chr3R12602519.AAAA.PASSAC=38GT0/01/01/00/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/00/00/00/00/00/01/00/01/00/00/01/00/00/00/00/00/10/00/01/00/10/00/00/00/00/00/00/01/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/00/00/00/00/00/00/00/00/00/01/00/01/01/00/00/01/01/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/10/00/10/00/00/00/00/00/00/00/00/10/00/00/00/00/01/01/10/00/00/01/10/00/00/00/10/00/00/11/01/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/10/00/00/00/00/00/10/00/01/00/01/00/00/0
chr3R12634494.AAT.PASSAC=62GT0/01/11/10/00/00/00/00/00/00/00/11/10/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/11/11/11/10/00/00/00/01/10/01/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/10/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/00/00/10/00/00/00/00/01/00/00/01/10/00/00/00/00/01/10/00/00/01/11/11/01/11/11/10/00/00/01/00/00/00/00/00/00/01/10/01/10/00/00/01/10/00/00/10/00/00/10/01/00/01/00/00/00/01/10/00/11/00/00/00/00/00/01/11/10/01/10/01/10/00/10/01/00/01/10/01/10/00/01/11/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/01/10/01/11/10/00/10/00/00/11/10/01/00/01/10/10/0
chr3R12595451.CT.PASSAC=29GT0/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/01/11/10/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/11/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/01/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/11/10/00/00/00/01/00/00/00/00/00/00/00/00/00/01/00/00/01/10/00/00/00/00/01/00/00/00/00/10/00/00/0
chr3R12601773.TC.PASSAC=48GT0/01/11/10/10/00/10/00/00/00/00/10/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/01/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/01/10/01/00/00/01/10/01/10/00/00/10/00/01/10/00/00/00/00/00/00/00/11/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/01/11/10/00/00/01/10/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/10/00/00/00/00/01/10/00/00/10/00/01/10/00/01/11/10/00/00/01/10/00/00/01/00/00/00/01/10/01/11/11/10/00/00/00/00/01/00/00/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/01/00/00/01/10/00/00/00/00/00/00/01/11/10/01/10/00/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R12616984ACTAAATCGAATTCCATATTAAAGCTTTGTTGAATAAATATTTTTAAGGCA
chr3R12602518TATGGCCTTTTCGACGCAAAAAAAAATAAAGGGCGAAAAATAACTGAAATTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R12602519ATGGCCTTTTCGACGCAAAAAAAAATAAAGGGCGAAAAATAACTGAAATTADmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R12634494ATTCAAGCGTTGGCATACAACGAAAACAGCAAACACACAGTAAACACATCA
chr3R12595451AAATCGTATTCGAAATAAGAAACTCAAGGAGGAGACATCACGATCACGGAT
chr3R12601773GCGAATGGTACAAGCCGAGTACTTTGGTAATTGAAGAGAGGCCTTAAGATG