Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
163833454.82558567108721e-130.6973317779186920.3083283248521010.974596471343503
163856352.4346903800222e-070.2755363615490180.2352474887865490.959954424809589
163856532.48869464762576e-070.2595306601234430.1964619578891130.998666916042904
163867022.69512935185362e-070.8881156439026210.1417161467947050.351278323420215
163864397.35046109159427e-060.08538028667977610.2775162992783570.833014880033356

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R16383345.GGG.PASSAC=174GT1/11/11/11/01/00/11/10/01/10/01/01/11/11/11/11/11/11/11/10/00/01/11/10/01/11/01/11/11/11/11/11/11/11/10/01/11/11/01/11/01/11/00/01/10/01/11/11/01/11/11/10/01/10/00/00/11/01/10/01/11/11/11/11/01/11/11/11/11/11/11/11/11/11/01/11/00/01/11/11/01/11/11/01/00/01/11/11/11/11/11/10/01/10/01/11/11/01/11/11/11/01/10/01/10/10/00/01/11/01/10/01/01/11/11/11/11/11/10/01/11/11/01/11/11/10/01/01/01/11/11/01/01/01/11/11/01/11/11/11/01/00/11/11/01/11/11/11/01/11/11/11/11/10/01/11/11/11/00/01/11/11/01/11/11/11/11/11/11/11/11/01/11/11/01/11/11/11/11/11/10/00/01/11/01/01/00/00/01/11/11/11/11/10/01/10/01/11/11/10/01/01/11/11/01/0
chr3R16385635.CT.PASSAC=44GT0/01/10/01/00/01/00/01/10/01/11/00/00/00/00/00/00/00/01/11/11/10/00/01/10/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/01/11/11/10/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/01/10/01/10/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/01/00/01/10/00/01/10/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/01/10/00/01/10/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/11/10/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/1
chr3R16385653.CT.PASSAC=45GT0/01/10/01/00/01/00/01/10/01/11/00/00/00/00/00/00/00/01/11/11/10/00/01/10/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/01/11/11/10/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/10/00/00/00/01/10/01/10/00/00/00/01/10/01/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/10/01/10/00/01/10/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/01/10/00/01/10/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/11/10/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/1
chr3R16386702.GGG.PASSAC=27GT0/00/00/00/00/00/10/00/00/01/10/00/00/00/00/00/00/00/01/11/11/10/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/11/10/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/00/01/10/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/01/11/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/0
chr3R16386436.TCTGA.PASSAC=4GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R16386439.GTTTTAAG,GTTTCAA,GTTTTCA.PASSAC=19,4,34GT0/01/10/00/10/03/00/03/30/03/30/10/00/00/00/00/00/00/03/33/33/30/00/03/30/00/02/20/01/11/10/00/00/00/03/30/00/01/00/00/00/00/03/30/03/30/00/00/00/02/22/20/01/13/33/30/30/01/00/00/00/00/00/00/00/00/00/00/00/00/02/20/01/10/00/00/03/30/00/00/00/00/00/00/03/30/03/30/00/01/00/03/30/03/30/00/00/00/00/00/00/00/00/00/00/10/03/30/00/00/03/30/00/00/10/03/30/00/03/30/00/00/00/00/00/03/30/00/00/03/30/00/00/00/00/00/00/00/00/00/00/10/30/00/01/10/00/00/00/00/03/30/00/03/30/10/00/00/03/30/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/03/30/03/03/30/00/00/00/00/00/01/03/30/03/30/03/30/00/00/00/00/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R16383345ATGCACATTTTCCGCGCGATTCTCGGACTCCGCCTGCGAAGCTCCAAAGAG
chr3R16385635CTAACATACCGTGACCGGCGGCATCTCGATCTGTTCCGCCTCCGTGACCAG
chr3R16385653CGGCATCTCGATCTGTTCCGCCTCCGTGACCAGTTTTCGGTTGCTCTGCAT
chr3R16386702CACCCGCGTCGCCGGAGGGGCGTGGGCGGGATCGGATGGGGCGCTGGCTTTDmelanogaster-FlyFactorSurvey-Bteb2_SOLEXA_2.5_FBgn0025679 , Dmelanogaster-FlyFactorSurvey-CG12029_SANGER_10_FBgn0035454 , Dmelanogaster-FlyFactorSurvey-CG12029_SOLEXA_5_FBgn0035454 , Dmelanogaster-FlyFactorSurvey-CG3065_F1.3_SANGER_2.5_FBgn0034946 , Dmelanogaster-FlyFactorSurvey-CG3065_F1.3_SOLEXA_2.5_FBgn0034946 , Dmelanogaster-FlyFactorSurvey-CG3065_F1.5_SOLEXA_2.5_FBgn0034946 , Dmelanogaster-FlyFactorSurvey-CG5669_SANGER_10_FBgn0039169 , Dmelanogaster-FlyFactorSurvey-CG5669_SOLEXA_5_FBgn0039169 , Dmelanogaster-FlyFactorSurvey-CG9895_SANGER_10_FBgn0034810 , Dmelanogaster-FlyFactorSurvey-CG9895_SOLEXA_5_FBgn0034810 , Dmelanogaster-FlyFactorSurvey-gsb_SOLEXA_5_FBgn0001148 , Dmelanogaster-FlyFactorSurvey-HLH106_SANGER_5_3_FBgn0261283 , Dmelanogaster-FlyFactorSurvey-klu_SOLEXA_5_FBgn0013469 , Dmelanogaster-FlyFactorSurvey-l(3)neo38_SANGER_2.5_FBgn0086910 , Dmelanogaster-FlyFactorSurvey-luna_SANGER_5_FBgn0040765 , Dmelanogaster-FlyFactorSurvey-luna_SOLEXA_5_FBgn0040765 , Dmelanogaster-FlyFactorSurvey-prd_SOLEXA_5_FBgn0003145 , Dmelanogaster-FlyFactorSurvey-Sp1_SANGER_5_FBgn0020378 , Dmelanogaster-FlyFactorSurvey-Sp1_SOLEXA_2.5_FBgn0020378 , Dmelanogaster-FlyFactorSurvey-sr_SANGER_5_FBgn0003499 , Dmelanogaster-FlyFactorSurvey-sr_SOLEXA_5_FBgn0003499
chr3R16386436CTGAAATCTGAAATTTTAACTTAATCTGTTTTAAAAACCGTAAAATAAGCTNA
chr3R16386439AAATCTGAAATTTTAACTTAATCTGTTTTAAAAACCGTAAAATAAGCTATANA