Reference allele is: Minor
P-values for top 5 SNPs
| Position | JointP | 68_specificP | 1012_sepecificP | 24_specificP |
|---|
| 19808658 | 5.34134393381946e-09 | 0.0307916379210013 | 0.000238449093066124 | 0.435099375278845 |
|---|
| 19808574 | 7.40673233169845e-08 | 0.0715708267467223 | 0.0304520961938393 | 0.819604256516823 |
|---|
| 19808510 | 1.17582804165029e-07 | 0.147851287391804 | 0.022366462933472 | 0.694244124023993 |
|---|
| 19808309 | 1.30111098376222e-05 | 0.967399453958303 | 0.586704885725624 | 0.610673023627399 |
|---|
| 19809178 | 0.000106595025263819 | 0.178322004434986 | 0.0133849195012627 | 0.736023080406425 |
|---|
Genotype info for top 5 SNPs
| #CHROM | POS | ID | REF | ALT | QUAL | FILTER | INFO | FORMAT | DGRP-021 | DGRP-026 | DGRP-028 | DGRP-031 | DGRP-032 | DGRP-038 | DGRP-040 | DGRP-041 | DGRP-042 | DGRP-045 | DGRP-048 | DGRP-049 | DGRP-057 | DGRP-059 | DGRP-069 | DGRP-073 | DGRP-075 | DGRP-083 | DGRP-085 | DGRP-088 | DGRP-091 | DGRP-093 | DGRP-100 | DGRP-101 | DGRP-105 | DGRP-109 | DGRP-129 | DGRP-136 | DGRP-138 | DGRP-142 | DGRP-149 | DGRP-153 | DGRP-158 | DGRP-161 | DGRP-176 | DGRP-177 | DGRP-181 | DGRP-189 | DGRP-195 | DGRP-208 | DGRP-217 | DGRP-223 | DGRP-227 | DGRP-228 | DGRP-229 | DGRP-233 | DGRP-235 | DGRP-237 | DGRP-239 | DGRP-256 | DGRP-280 | DGRP-287 | DGRP-301 | DGRP-303 | DGRP-304 | DGRP-306 | DGRP-307 | DGRP-309 | DGRP-310 | DGRP-313 | DGRP-315 | DGRP-317 | DGRP-318 | DGRP-319 | DGRP-320 | DGRP-321 | DGRP-324 | DGRP-325 | DGRP-332 | DGRP-335 | DGRP-336 | DGRP-338 | DGRP-340 | DGRP-348 | DGRP-350 | DGRP-352 | DGRP-354 | DGRP-355 | DGRP-356 | DGRP-357 | DGRP-358 | DGRP-359 | DGRP-360 | DGRP-361 | DGRP-362 | DGRP-365 | DGRP-367 | DGRP-370 | DGRP-371 | DGRP-373 | DGRP-374 | DGRP-375 | DGRP-377 | DGRP-379 | DGRP-380 | DGRP-381 | DGRP-382 | DGRP-383 | DGRP-385 | DGRP-386 | DGRP-390 | DGRP-391 | DGRP-392 | DGRP-395 | DGRP-397 | DGRP-399 | DGRP-405 | DGRP-406 | DGRP-409 | DGRP-426 | DGRP-427 | DGRP-437 | DGRP-439 | DGRP-440 | DGRP-441 | DGRP-443 | DGRP-461 | DGRP-486 | DGRP-491 | DGRP-492 | DGRP-502 | DGRP-505 | DGRP-508 | DGRP-509 | DGRP-513 | DGRP-517 | DGRP-528 | DGRP-530 | DGRP-531 | DGRP-535 | DGRP-551 | DGRP-555 | DGRP-559 | DGRP-563 | DGRP-566 | DGRP-584 | DGRP-589 | DGRP-595 | DGRP-596 | DGRP-627 | DGRP-630 | DGRP-634 | DGRP-639 | DGRP-642 | DGRP-646 | DGRP-703 | DGRP-705 | DGRP-707 | DGRP-712 | DGRP-714 | DGRP-716 | DGRP-721 | DGRP-727 | DGRP-730 | DGRP-732 | DGRP-737 | DGRP-738 | DGRP-748 | DGRP-757 | DGRP-761 | DGRP-765 | DGRP-774 | DGRP-776 | DGRP-783 | DGRP-786 | DGRP-787 | DGRP-790 | DGRP-796 | DGRP-799 | DGRP-801 | DGRP-802 | DGRP-804 | DGRP-805 | DGRP-808 | DGRP-810 | DGRP-812 | DGRP-818 | DGRP-819 | DGRP-820 | DGRP-821 | DGRP-822 | DGRP-832 | DGRP-837 | DGRP-843 | DGRP-849 | DGRP-850 | DGRP-852 | DGRP-853 | DGRP-855 | DGRP-857 | DGRP-859 | DGRP-861 | DGRP-879 | DGRP-882 | DGRP-884 | DGRP-887 | DGRP-890 | DGRP-892 | DGRP-894 | DGRP-897 | DGRP-900 | DGRP-907 | DGRP-908 | DGRP-911 | DGRP-913 |
|---|
| chr3R | 19808658 | . | A | G | . | PASS | AC=121 | GT | 1/1 | 0/0 | 1/1 | 0/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 1/0 | 0/0 | 1/0 | 0/0 | 0/1 | 1/1 | 1/1 | 0/0 | 1/0 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/1 | 0/0 | 1/1 | 0/0 | 1/0 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/0 | 0/0 | 1/0 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/1 | 1/1 | 1/0 | 0/0 | 1/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 0/1 | 1/1 | 0/0 | 0/0 |
|---|
| chr3R | 19808574 | . | AAAA | A,AA,AAA | . | PASS | AC=16,7,80 | GT | 0/0 | 3/0 | 0/0 | 0/2 | 0/0 | 0/2 | 3/0 | 3/0 | 0/0 | 3/0 | 0/3 | 0/0 | 3/0 | 0/0 | 0/0 | 0/0 | 3/0 | 0/0 | 0/0 | 3/3 | 0/0 | 3/0 | 0/0 | 3/3 | 0/0 | 0/0 | 0/0 | 0/3 | 0/3 | 0/0 | 0/0 | 0/0 | 0/3 | 0/0 | 0/0 | 0/0 | 0/3 | 0/0 | 3/3 | 3/0 | 3/0 | 0/0 | 0/0 | 3/0 | 3/0 | 0/0 | 0/0 | 1/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 3/0 | 0/0 | 1/0 | 0/3 | 0/0 | 0/3 | 0/0 | 0/3 | 3/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/3 | 0/0 | 0/0 | 1/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/3 | 0/0 | 0/0 | 0/0 | 3/3 | 3/0 | 0/3 | 0/0 | 3/0 | 3/2 | 3/2 | 0/0 | 3/0 | 0/0 | 3/0 | 0/0 | 3/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 3/0 | 0/0 | 1/0 | 0/0 | 1/3 | 0/0 | 1/0 | 0/0 | 0/0 | 0/3 | 0/0 | 0/0 | 0/0 | 0/0 | 3/0 | 3/3 | 0/3 | 1/1 | 0/0 | 3/0 | 3/0 | 0/0 | 3/0 | 0/3 | 3/0 | 3/0 | 0/0 | 1/0 | 3/0 | 3/0 | 0/0 | 0/3 | 0/0 | 0/0 | 3/0 | 0/3 | 3/0 | 0/0 | 3/0 | 0/3 | 0/3 | 0/1 | 0/1 | 0/0 | 1/0 | 2/0 | 0/3 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/3 | 0/3 | 3/0 | 0/0 | 3/0 | 0/0 | 3/0 | 0/0 | 0/0 | 0/0 | 3/0 | 0/0 | 3/3 | 0/0 | 3/0 | 0/0 | 0/0 | 0/3 | 3/0 | 0/0 | 3/0 | 0/0 | 1/1 | 0/0 | 3/3 | 3/0 | 0/0 | 1/0 | 1/0 | 3/0 | 0/0 | 3/0 | 3/0 | 3/0 | 0/3 | 0/2 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/3 | 0/0 | 0/0 | 0/3 | 0/0 | 0/0 | 3/0 | 0/3 | 0/0 | 1/2 | 3/0 |
|---|
| chr3R | 19808510 | . | G | C | . | PASS | AC=119 | GT | 0/0 | 0/0 | 1/1 | 1/0 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 1/0 | 0/0 | 1/0 | 0/0 | 0/1 | 1/1 | 1/1 | 0/0 | 1/0 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/0 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/1 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/0 | 0/0 | 1/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/1 | 1/1 | 1/1 | 0/0 | 1/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 0/1 | 1/1 | 0/0 | 0/0 |
|---|
| chr3R | 19808309 | . | T | G | . | PASS | AC=135 | GT | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/0 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/0 | 0/0 | 1/1 | 0/0 | 1/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/0 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/0 | 1/1 | 1/0 | 0/0 | 1/0 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/0 | 1/0 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/1 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 1/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 1/1 | 1/1 | 1/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/0 | 1/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/0 | 1/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 0/1 | 1/1 | 0/0 | 0/0 |
|---|
| chr3R | 19809178 | . | T | C | . | PASS | AC=55 | GT | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 1/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 1/1 | 1/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 1/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/1 | 1/0 | 0/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/1 | 0/0 | 0/0 | 1/1 | 0/0 | 1/1 | 1/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 1/0 | 0/0 | 1/1 | 0/1 |
|---|
| chr3R | 19809178 | . | T | TACATACACAAATTCACACGAATACCAAACAAACTTAAATCTATAAAAAATTGAATTTCTTAACTAATTAATGCACCGGACGCTTTGAACTTTAACTTTCGAATTTTCTCTATCTCTACCTAAATACCACCGTTAAAAATGAAATGTCAATTGAATACCGTTAACCGCAGGCCACCATGTTGAAAAAGAACAAGCTGAAAATGAAACGCCGGAACACGGAACCCACCATGATGGTGGCCGGCTCGGCCGCCCCCCCTCTGTCCCTGGCCCTACCGCCCAGCGTAGGCGAAGTGGGCGTGGCTGGGGAGGGCGCCGAGGGCGACGGCGGTACGAACAACACGGATTTCTGAATATGGTACAGCGAGCGTCTGATTTAACGTGCTAATTCCAGCGCAGAACCAAACTGCATCCCACACAGACCACAGACCCACCCACCCGCGAAAAGCCCACCCGATCCCCCCACCCAATAGCAAAAGCAGCAGCAGAAGAAGCAAAAGGAGCAGGAGCAGAAGCTAAAGAAGAAGCCACTTACCATCTCAGCAGTCCATAGTCCAACACTGAACACCAAACACCACAGAAACCAAAGAGCTGGCAACTCGAAAATCAAAAGCTGTAATCAAAATTACTTGTATAAAGTGTCCAGTCCACAGTATTAGATCGGATTATATGACGATGATCAGTTTAGCAGCTCAGCGAACCCGGCCGCCTTTCCACGGTCTGAAATCAGTACGTTAAACTCAAACAGCTCGAACCAACACTGTCCGCTCGCCATTTGCATTTCGTACAGTGTAGAAAGCAGCAAGATGCGCAGCGGGCAGACATGAAACTAAGCCAACTCAAATGTTAAACAATAGAGGGTATTTATAGTAAAGGAAAGAGATTTAATTCAAAAGCACTCAGCAATAGTCTGGCCAAGTTGTATCAAATTCAAGTTCAATTATGTTCCTTCTCGTTTTGTTCCTACGTAAGCGACAGCAGAAACCGATTAGTGATACCGTTAAACAGAAAGAAGCGCAAGCAGTAGTAAAAAATAAACAGGGAGAATGAAAAAGAAAACAAAAAGAAGGAGTAAAGCTAAAGCTAGAGAAACCCAAGAAAACAAAACAAAAAGTACAAAATTGTTGAAAATTGTTTGTTATAACTAAATGAAATCGCGTAAAACCAAGTAAGCACACCCGAACTACGACAAACAAAGTGAAATCAAAGAAATAAAGCTATGTATTACCAAGTAGGTAAATAATGTTGTGTTCCAGCGAACCCCAGTGTTCCGAAACCAACGTGAAAAGGTTAAAAAAAAAAACCCAGCCAGGTCAAGATACAAACGTACAGCAGATGCGGGAAAATTTATATGAAACTTTTTTATGTTGTGGATCGATTCGAAACGCGATATTGAAACTTTTGAGTGGGAAAAAAGCTGCAAATTGCATAGTTGGCTAACTACTAATTGGGACGAATAAATTGGAACCCACAGGCGGGCCTAGCTCGTCCTGTGTGCCATTGAATTAAATGCGGAAAAACACCTTTGGATTGTGCAATTGGTATGAATTTTCTCCGCTGCTGTGCGTCCACCAAAAGAAAGAAGAAAGTGAAAAACCACGAGAAATAGGAAAATGCATTTTTCGAGCGTAGGCAATGGCATCGCAAGTATTTCACCTGCATTTGTCTAAAACAAGAAACAAAAAATGAAAGAAAAAACCAAAAAAAAAACCAACTTATTTTGGATATCAAATCCGATTAGTGGAATGAGAAGAGTACAGAGGAGACACAAAATCCGAAAAACTACAATTTCAACTTTAAAACGCTTATAAAGAAAACAATTTTTGAAAGTTTTATAACTAATTTTACATTACGTCTTATGTGAACGACACACCACACGCCTCATGGTACTACCAACTATGTAT | . | PASS | AC=7 | GT | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/1 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 | 0/0 |
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Sequences and list of disrupted MOTIFs around top 5 SNPs
| Chr | Position | Sequence | Motifs |
|---|
| chr3R | 19808658 | TTTTTATGTTGTGGATCGATTCGAAACGCGATATTGAAACTTTTGAGTGGG | |
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| chr3R | 19808574 | ACCAACGTGAAAAGGTTAAAAAAAAAAACCCAGCCAGGTCAAGATACAAAC | NA |
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| chr3R | 19808510 | ATAAAGCTATGTATTACCAAGTAGGTAAATAATGTTGTGTTCCAGCGAACC | |
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| chr3R | 19808309 | AGAAGCGCAAGCAGTAGTAAAAAATAAACAGGGAGAATGAAAAAGAAAACA | Dmelanogaster-FlyFactorSurvey-bin_FlyReg_FBgn0045759 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 |
|---|
| chr3R | 19809178 | CCTCATGGTACTACCAACTATGTATTTATATAGTGCTAGTACCAGGAGCAG | |
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| chr3R | 19809178 | CCTCATGGTACTACCAACTATGTATTTATATAGTGCTAGTACCAGGAGCAG | Dmelanogaster-FlyFactorSurvey-ab_SOLEXA_5_FBgn0259750 , Dmelanogaster-FlyFactorSurvey-Adf1_SANGER_5_FBgn0000054 , Dmelanogaster-FlyFactorSurvey-ase_da_SANGER_10_FBgn0000137 , Dmelanogaster-FlyFactorSurvey-ase_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-bin_FlyReg_FBgn0045759 , Dmelanogaster-FlyFactorSurvey-Blimp.1_NAR_FBgn0035625 , Dmelanogaster-FlyFactorSurvey-Blimp.1_SANGER_5_FBgn0035625 , Dmelanogaster-FlyFactorSurvey-BtbVII_SANGER_5_FBgn0263108 , Dmelanogaster-FlyFactorSurvey-btd_NAR_FBgn0000233 , Dmelanogaster-FlyFactorSurvey-Bteb2_SANGER_2.5_FBgn0025679 , Dmelanogaster-FlyFactorSurvey-Bteb2_SOLEXA_2.5_FBgn0025679 , Dmelanogaster-FlyFactorSurvey-CG10267_SANGER_5_FBgn0037446 , Dmelanogaster-FlyFactorSurvey-CG12029_SANGER_10_FBgn0035454 , Dmelanogaster-FlyFactorSurvey-CG12029_SOLEXA_5_FBgn0035454 , Dmelanogaster-FlyFactorSurvey-CG13897_SANGER_5_FBgn0035160 , Dmelanogaster-FlyFactorSurvey-CG14962_SANGER_5_FBgn0035407 , Dmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG3065_F1.3_SANGER_2.5_FBgn0034946 , Dmelanogaster-FlyFactorSurvey-CG3065_F1.3_SOLEXA_2.5_FBgn0034946 , Dmelanogaster-FlyFactorSurvey-CG3065_F1.5_SOLEXA_2.5_FBgn0034946 , Dmelanogaster-FlyFactorSurvey-CG31670_SANGER_5_FBgn0031375 , Dmelanogaster-FlyFactorSurvey-CG32105_Cell_FBgn0052105 , Dmelanogaster-FlyFactorSurvey-CG5669_SANGER_10_FBgn0039169 , Dmelanogaster-FlyFactorSurvey-CG5669_SOLEXA_5_FBgn0039169 , Dmelanogaster-FlyFactorSurvey-CG7368_SOLEXA_2.5_FBgn0036179 , Dmelanogaster-FlyFactorSurvey-CG7386_F10.12_SANGER_5_FBgn0035691 , Dmelanogaster-FlyFactorSurvey-CG8765_SANGER_5_FBgn0036900 , Dmelanogaster-FlyFactorSurvey-CG9895_SANGER_10_FBgn0034810 , Dmelanogaster-FlyFactorSurvey-CG9895_SOLEXA_5_FBgn0034810 , Dmelanogaster-FlyFactorSurvey-D_NAR_FBgn0000411 , Dmelanogaster-FlyFactorSurvey-Ets98B_SANGER_10_FBgn0005659 , Dmelanogaster-FlyFactorSurvey-ey_FlyReg_FBgn0005558 , Dmelanogaster-FlyFactorSurvey-gsb_SOLEXA_5_FBgn0001148 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-Hsf_FlyReg_FBgn0001222 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-klu_SOLEXA_5_FBgn0013469 , Dmelanogaster-FlyFactorSurvey-l(1)sc_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-l(1)sc_da_SANGER_5_FBgn0002561 , Dmelanogaster-FlyFactorSurvey-l(3)neo38_SANGER_2.5_FBgn0086910 , Dmelanogaster-FlyFactorSurvey-l(3)neo38_SOLEXA_2.5_FBgn0086910 , Dmelanogaster-FlyFactorSurvey-lmd_SANGER_5_FBgn0039039 , Dmelanogaster-FlyFactorSurvey-lmd_SOLEXA_5_FBgn0039039 , Dmelanogaster-FlyFactorSurvey-lola.PD_SANGER_5_FBgn0005630 , Dmelanogaster-FlyFactorSurvey-luna_SANGER_5_FBgn0040765 , Dmelanogaster-FlyFactorSurvey-luna_SOLEXA_5_FBgn0040765 , Dmelanogaster-FlyFactorSurvey-Mad_FlyReg_FBgn0011648 , Dmelanogaster-FlyFactorSurvey-Mes2_SANGER_5_FBgn0037207 , Dmelanogaster-FlyFactorSurvey-Opa_SANGER_5_FBgn0003002 , Dmelanogaster-FlyFactorSurvey-ovo_SOLEXA_5_FBgn0003028 , Dmelanogaster-FlyFactorSurvey-pdm2_SOLEXA_5_FBgn0004394 , Dmelanogaster-FlyFactorSurvey-pfk_SANGER_5_FBgn0035405 , Dmelanogaster-FlyFactorSurvey-pho_SOLEXA_5_FBgn0002521 , Dmelanogaster-FlyFactorSurvey-phol_SOLEXA_5_FBgn0035997 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-run_Bgb_NBT_FBgn0003300 , Dmelanogaster-FlyFactorSurvey-run_Bgb_NBT_FBgn0013753 , Dmelanogaster-FlyFactorSurvey-Six4_Cell_FBgn0027364 , Dmelanogaster-FlyFactorSurvey-Sp1_SANGER_5_FBgn0020378 , Dmelanogaster-FlyFactorSurvey-Sp1_SOLEXA_2.5_FBgn0020378 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sr_SANGER_5_FBgn0003499 , Dmelanogaster-FlyFactorSurvey-sr_SOLEXA_5_FBgn0003499 , Dmelanogaster-FlyFactorSurvey-sug_SANGER_5_FBgn0033782 , Dmelanogaster-FlyFactorSurvey-wor_SANGER_2.5_FBgn0001983 , Dmelanogaster-FlyFactorSurvey-Xrp1_CG6272_SANGER_5_FBgn0036126 , Dmelanogaster-FlyFactorSurvey-Xrp1_CG6272_SANGER_5_FBgn0261113 , Dmelanogaster-JASPAR_CORE-dl_1-MA0022.1 , Dmelanogaster-JASPAR_CORE-run::Bgb-MA0242.1 , Dmelanogaster-JASPAR_CORE-btd-MA0443.1 , Dmelanogaster-JASPAR_CORE-D-MA00445.1 , Dmelanogaster-JASPAR_CORE-hkb-MA0450.1 , Dmelanogaster-JASPAR_CORE-opa-MA0456.1 |
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