Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
20357301.57681606924872e-050.6484074358135870.1005306105674410.697382391016263
20341731.90395811401882e-050.2407835887615840.2081419613812210.74414668235577
20353473.82108360539109e-050.6245912686177510.295180686715950.543909928314971
19930866.32477216924472e-050.2180811386804190.05139022381989750.282347248810898
20126226.89494272981423e-050.4880218013241750.2383167145626160.463291921136518

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R2035730.AT.PASSAC=119GT0/00/01/10/10/00/01/11/11/11/11/00/00/00/01/00/01/11/11/11/10/01/10/01/10/00/01/10/00/01/11/10/00/01/10/00/01/11/11/10/01/11/11/11/10/00/01/11/11/11/10/00/00/01/11/11/10/01/11/11/11/10/01/10/01/11/00/00/01/11/11/11/10/00/00/01/10/00/01/10/00/01/10/01/11/11/10/00/00/00/10/00/01/10/01/11/11/10/01/11/11/11/11/11/11/11/10/01/10/01/11/11/11/11/00/00/01/11/11/10/00/01/10/00/01/11/10/01/10/01/10/01/10/11/10/00/01/11/11/10/10/00/00/00/00/00/01/11/11/10/01/10/01/10/01/01/10/10/01/11/10/00/00/00/01/10/00/01/10/00/00/00/00/01/11/11/10/11/11/10/01/11/10/01/11/11/11/11/10/01/01/10/01/11/11/01/10/01/11/10/01/10/01/11/10/0
chr3R2034172.TTT.PASSAC=4GT0/00/00/01/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R2034173.TTT.PASSAC=76GT0/00/01/00/00/00/01/01/00/00/01/00/00/00/00/11/01/01/00/00/10/00/10/00/00/00/01/00/00/00/00/10/00/01/10/01/00/01/00/00/01/01/01/01/10/00/01/01/01/10/00/00/00/01/01/01/00/01/01/11/00/00/01/00/01/00/00/01/01/00/01/00/10/00/00/01/00/00/00/00/00/01/00/01/01/01/00/00/00/00/10/00/00/00/01/00/01/01/00/00/01/01/00/00/00/10/00/01/00/00/01/01/01/00/00/00/00/00/00/00/00/01/00/00/00/01/00/11/00/00/00/01/00/00/00/00/00/01/01/00/00/10/10/00/00/00/01/01/01/00/01/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/01/00/00/00/00/00/00/01/01/00/10/01/00/01/00/00/00/00/00/00/00/00/01/01/00/00/00/00/00/00/01/01/00/01/00/00/01/00/0
chr3R2035347.TC.PASSAC=91GT0/00/01/10/00/00/01/11/10/01/11/00/00/00/01/00/01/11/10/00/11/11/10/00/00/00/01/10/00/00/01/00/00/01/10/00/01/11/10/00/01/11/11/11/10/00/01/11/11/11/10/00/00/01/11/11/10/00/11/11/11/10/01/10/01/10/10/01/11/10/01/11/10/00/00/01/00/00/00/00/00/01/10/01/11/11/10/00/01/11/00/00/00/01/11/10/01/10/00/01/11/11/10/10/00/10/00/01/10/00/01/11/11/10/00/00/00/00/00/00/00/01/10/00/01/11/10/01/10/01/10/11/10/00/00/00/01/11/11/10/10/00/00/00/00/00/01/11/11/10/01/10/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/11/11/10/01/11/10/01/10/00/01/10/00/00/00/00/01/01/10/01/10/01/10/00/01/11/10/01/00/01/11/10/0
chr3R1993086.GA.PASSAC=85GT0/00/01/11/00/00/11/10/00/01/11/11/10/00/01/00/01/11/10/01/00/01/11/10/00/00/01/11/01/10/01/00/00/01/10/00/01/11/10/00/00/01/11/11/10/00/00/00/01/11/10/01/10/01/11/11/10/00/11/11/11/10/01/10/01/10/10/01/10/00/00/00/00/00/00/01/10/00/00/01/10/00/10/01/11/11/10/00/00/00/10/00/00/00/01/10/01/10/00/01/11/11/10/10/00/00/00/01/10/00/01/11/10/01/10/00/00/00/00/00/00/01/10/00/00/00/00/01/10/01/10/01/10/00/00/00/00/01/10/00/00/00/00/00/01/10/01/11/11/00/01/10/00/00/00/01/10/00/00/01/10/00/01/11/10/00/00/01/10/00/00/10/00/00/11/11/10/01/11/00/01/00/00/00/01/10/00/00/00/01/00/00/00/00/01/00/00/01/11/11/11/00/01/11/10/0
chr3R2012622.TTCATTAATTTTCATGTCCGCC,T,TTCATTTATTTTCATGTCCGC.PASSAC=54,10,50GT0/00/01/10/00/01/01/11/13/33/03/00/00/00/00/11/11/11/10/00/10/00/00/03/33/30/01/10/01/13/33/30/00/01/13/31/13/31/03/30/01/11/01/11/10/00/03/33/30/03/30/00/03/31/11/11/00/01/02/21/13/33/03/30/02/20/10/03/31/13/31/11/10/00/00/01/10/00/00/01/10/00/20/02/02/01/10/00/00/00/10/00/00/00/01/13/30/01/10/03/31/01/10/30/01/30/00/01/10/03/31/11/00/00/33/00/00/00/03/31/13/32/00/00/00/01/10/02/00/03/30/01/10/30/00/00/00/01/13/30/03/00/03/30/00/00/01/12/21/13/30/00/03/30/00/03/30/00/00/01/10/00/00/03/30/00/00/01/10/00/00/00/00/00/31/11/13/03/32/20/01/10/03/30/03/33/30/00/33/31/00/03/30/00/01/00/00/01/11/10/03/20/03/33/30/3

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R2035730ATTCAAGGGTGTACATAAATTGTTAAATCTTTCGACCCGATAAAGCCATCA
chr3R2034172GTTACCGGATTTTCTCCTTTTTTTTTCTTTTCTAGTTATTTACGTTTACATDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R2034173TTACCGGATTTTCTCCTTTTTTTTTCTTTTCTAGTTATTTACGTTTACATADmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R2035347CCAATTTAAACGACCATTCGATTGTGGCCAATAACTTTTAACCGTACTTTA
chr3R1993086GCCGATGCCAAGCGTGTTTATCGCGCAATGTGATGTCTGCAGAATTTCGGG
chr3R2012622GTGCAGTATGTTTCTATTGCGGTGTTCATTAATTTTCATGTCCGCATTTAGNA