Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
199560594.57790275019862e-120.690333087610260.4138543100212060.187095957684978
199542631.3567131958174e-100.9880436740602250.1900568419819810.14690563223309
199538165.4378628213028e-090.3030148318670440.6551486824950810.149756056757631
199541201.65608298811668e-080.8952777755179550.6732669927460230.24288039254862
199541801.65608298811668e-080.8952777755179550.6732669927460230.24288039254862

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R19956059.GT.PASSAC=94GT0/01/11/11/11/11/10/01/11/10/00/11/10/01/10/01/10/00/00/01/11/10/01/10/00/00/00/00/10/00/00/01/10/00/00/00/01/10/00/00/01/00/01/01/11/10/00/01/11/10/00/00/01/11/00/00/00/00/11/11/10/01/11/10/00/00/01/11/11/10/01/11/10/01/11/11/00/00/00/00/01/00/00/00/00/01/10/00/00/00/01/10/00/00/00/01/10/01/10/00/01/10/00/01/10/01/11/10/01/10/00/01/10/00/00/01/11/10/00/01/10/00/01/10/01/10/01/11/11/00/01/11/11/10/01/01/10/00/01/10/00/00/10/01/11/11/11/01/11/11/10/01/10/00/01/11/00/10/00/01/10/00/01/11/10/01/10/00/01/10/00/00/00/01/11/10/00/00/01/10/01/11/11/10/00/00/01/10/01/00/00/01/10/00/00/10/00/00/00/00/00/01/11/11/01/0
chr3R19956059.GGG.PASSAC=5GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/0
chr3R19954263.CT.PASSAC=100GT0/01/11/10/01/11/00/01/11/10/00/01/10/01/10/01/11/10/00/01/11/10/00/00/00/00/00/01/00/00/00/01/10/00/00/00/01/10/00/00/01/10/01/11/11/10/00/01/11/10/01/11/11/11/00/00/00/00/01/11/10/01/11/10/00/01/11/11/11/11/10/00/00/01/11/11/10/00/00/00/01/11/10/00/00/01/10/00/01/10/01/11/10/00/01/11/10/01/10/01/11/10/00/01/10/01/11/10/01/10/00/01/10/00/00/01/11/11/11/11/10/00/01/10/01/10/01/11/11/10/01/11/11/00/01/01/11/10/01/10/00/00/00/01/11/11/11/11/11/11/10/01/11/10/01/01/10/10/00/01/10/00/00/01/10/01/10/00/01/10/00/00/00/01/11/10/00/00/01/10/01/11/11/10/00/00/01/10/01/10/00/01/10/00/01/00/00/00/00/00/00/01/11/11/11/0
chr3R19953816.CT.PASSAC=118GT1/11/11/11/01/11/11/11/11/11/10/01/10/01/10/00/01/10/00/01/11/10/01/11/10/01/11/11/10/01/10/01/10/00/00/00/01/10/01/10/01/10/01/11/11/10/00/01/11/10/00/01/11/11/00/00/00/01/11/11/10/01/11/10/00/01/11/11/11/11/00/00/00/01/11/11/10/00/00/00/01/11/10/00/01/11/11/10/01/10/01/11/10/00/00/01/11/11/10/00/01/10/00/01/11/01/11/10/01/10/00/01/11/10/10/01/11/11/10/01/11/10/01/10/01/10/01/11/11/11/11/11/11/10/01/11/10/01/11/10/00/00/00/01/11/11/11/11/11/11/10/01/10/00/01/11/11/10/01/11/10/00/01/11/10/01/10/00/01/10/01/00/00/01/11/10/00/00/01/10/01/11/11/10/00/00/01/10/01/10/00/01/10/01/11/01/10/00/00/00/00/01/11/11/11/1
chr3R19954120.GT.PASSAC=108GT0/01/11/10/01/11/01/10/01/10/00/01/10/01/10/01/11/10/00/01/11/10/00/00/00/01/11/11/00/00/00/01/00/00/00/00/01/10/00/00/01/10/01/11/11/10/00/01/11/10/01/11/11/11/00/00/10/00/01/11/10/01/11/10/00/01/11/11/11/11/10/00/00/01/11/11/10/00/00/00/01/11/10/00/00/01/11/10/01/10/01/11/10/00/01/11/11/11/10/01/11/10/00/01/11/01/11/10/01/10/00/01/10/00/00/01/01/11/11/11/11/10/01/10/01/10/01/11/11/11/11/11/11/00/01/11/11/11/11/10/00/00/00/01/10/01/11/11/11/11/10/01/11/10/00/11/10/10/00/01/10/00/00/01/10/01/10/00/01/10/00/00/00/01/11/10/00/00/01/10/01/11/11/10/00/00/01/10/01/10/00/01/10/00/01/00/00/00/00/00/00/01/11/11/11/0
chr3R19954180.GT.PASSAC=108GT0/01/11/10/01/11/01/10/01/10/00/01/10/01/10/01/11/10/00/01/11/10/00/00/00/01/11/10/10/00/00/01/10/00/00/00/01/10/00/00/01/10/01/11/11/10/00/01/11/10/01/11/11/11/00/00/10/00/01/11/10/01/11/10/00/01/11/11/11/11/10/00/00/01/11/11/10/00/00/00/01/11/10/00/00/01/11/10/01/10/01/11/10/00/01/11/11/11/10/01/11/10/00/01/11/01/11/10/01/10/00/01/10/00/00/01/01/11/11/11/11/10/01/10/01/10/01/11/11/11/11/11/11/00/01/11/11/11/11/10/00/00/00/01/10/01/11/11/11/11/10/01/11/10/01/01/10/10/00/01/10/00/00/01/10/01/10/00/01/10/00/00/00/01/11/10/00/00/01/10/01/11/11/10/00/00/01/10/01/10/00/01/10/00/01/00/00/00/00/00/00/01/11/11/11/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R19956059TGGCTGGCGATAACAGCGCAAGAGGAATATCACAAAAAAATAACCTTTTCA
chr3R19956059TGGCTGGCGATAACAGCGCAAGAGGAATATCACAAAAAAATAACCTTTTCA
chr3R19954263GGGGTTATTATGAAGCAGATCAACCAGCTGACGTGCTGCCTGGAGATTTATDmelanogaster-FlyFactorSurvey-cato_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-cato_da_SANGER_10_FBgn0024249 , Dmelanogaster-FlyFactorSurvey-crp_SANGER_10_FBgn0001994 , Dmelanogaster-FlyFactorSurvey-Fer1_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Fer1_da_SANGER_10_FBgn0037475 , Dmelanogaster-FlyFactorSurvey-Fer1_SANGER_5_FBgn0037475 , Dmelanogaster-FlyFactorSurvey-Fer2_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Fer2_da_SANGER_5_FBgn0038402 , Dmelanogaster-FlyFactorSurvey-nau_SANGER_5_FBgn0002922
chr3R19953816ACTAGTCAGCACGAAACAAAGCAACTATATTTAATACTTAGCATATTTAAT
chr3R19954120CAGCTGGCACAGGTTCTCGATCTCGTCCGGACTGCAGATTTGCTGCAGGCTDmelanogaster-JASPAR_CORE-Eip74EF-MA0026.1
chr3R19954180GATTAGCTGTGATGGGAAGATAATGTGTGTAATCTCATAAATTTGGAATAT