Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
201441082.9677707404366e-090.1182160584817630.8690849240009640.127253843267687
201828581.0671917534643e-050.821725347349890.9370402330408440.606453496565931
201742001.20940664850886e-050.1264725813723010.5945495083226170.107470916246038
201730301.62808544121923e-050.06690587783454750.4788450419966990.0625912750831123
201358844.97394065893872e-050.0455238560621580.5867189775307270.0841426888848072

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R20144107.AAA.PASSAC=150GT1/00/01/00/00/10/10/11/10/10/10/01/10/10/00/10/11/11/10/00/11/00/10/10/00/10/10/00/11/00/10/10/00/10/10/10/10/10/00/11/11/10/00/10/00/10/00/01/10/00/11/01/00/10/10/11/00/01/00/10/10/00/10/10/00/10/10/10/00/10/01/00/00/00/00/00/10/10/10/11/00/00/01/00/00/00/10/10/10/11/10/00/10/00/00/10/10/10/11/00/00/00/10/11/10/01/10/10/11/00/10/00/11/00/10/10/11/00/11/00/10/10/10/10/11/01/01/01/00/10/10/00/10/00/10/10/01/10/10/10/00/10/00/11/01/00/00/00/10/00/01/10/10/00/11/00/10/10/00/10/10/00/10/11/01/11/11/10/00/01/00/11/01/00/00/10/10/00/11/11/01/01/00/10/10/00/11/00/10/10/10/00/10/10/10/10/11/10/01/00/10/00/10/11/00/0
chr3R20144108.AAA.PASSAC=81GT0/00/00/10/10/00/10/00/00/10/00/10/00/00/01/00/00/00/01/10/10/00/10/00/00/00/01/00/00/00/00/00/10/00/00/00/00/11/00/00/00/01/01/00/00/00/01/00/00/00/00/00/00/01/01/00/01/00/00/10/10/00/10/01/00/11/00/01/00/10/10/00/01/01/01/00/01/01/00/00/00/11/00/00/11/00/10/10/11/00/01/00/10/00/00/00/00/00/00/00/00/11/00/00/00/10/00/00/10/00/10/00/00/00/10/01/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/10/01/00/00/11/00/00/10/11/00/11/00/10/00/01/00/00/00/00/00/00/01/00/00/00/00/11/00/00/11/00/01/00/00/00/00/01/01/00/00/00/00/01/00/01/01/01/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/10/01/00/00/00/00/01/00/10/10/00/1
chr3R20182858.GA.PASSAC=70GT0/01/10/00/10/00/01/10/10/00/01/01/10/00/00/01/11/11/10/00/01/10/00/01/10/00/00/00/10/00/01/10/01/10/01/11/10/00/01/01/11/10/00/00/01/10/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/10/00/01/00/00/00/01/00/00/00/00/00/00/00/01/01/00/00/00/00/01/10/01/10/00/00/00/00/00/01/10/00/00/01/10/01/10/00/01/10/01/11/10/01/11/10/00/00/00/00/00/00/11/01/10/00/01/10/10/00/01/10/00/01/00/00/00/01/10/00/01/00/10/01/00/01/10/00/00/00/00/00/00/01/00/00/01/01/00/00/01/00/00/01/10/00/00/01/01/11/10/01/11/11/11/00/00/01/10/00/00/00/10/01/10/01/00/01/00/00/01/11/0
chr3R20174200.CA.PASSAC=31GT0/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/11/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/01/10/00/00/00/00/00/01/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/01/11/11/11/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/01/10/01/10/00/01/10/0
chr3R20173030.GA.PASSAC=33GT0/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/11/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/01/10/00/01/10/00/00/10/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/01/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/01/11/11/11/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/11/00/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/01/10/01/10/00/01/10/0
chr3R20135884.GA.PASSAC=138GT0/01/11/11/01/10/01/11/11/11/11/00/11/11/11/10/00/00/01/11/10/01/10/01/10/00/01/11/00/01/10/01/10/01/10/01/11/10/01/10/00/01/11/10/00/01/11/10/01/10/00/00/01/11/01/11/01/10/01/11/11/11/11/10/01/11/11/11/10/11/11/11/11/11/11/11/11/11/10/00/01/11/10/01/01/11/11/11/11/10/01/10/01/11/11/11/11/11/10/00/00/11/10/00/01/00/01/11/11/11/11/11/10/01/00/01/10/01/10/01/10/01/10/01/10/00/01/10/01/10/01/11/11/00/01/11/10/01/11/11/11/01/01/10/00/01/11/11/11/11/11/11/11/10/00/01/11/11/11/10/01/11/10/00/00/00/01/11/11/10/00/00/01/11/11/11/11/11/11/11/10/00/01/11/10/00/00/01/11/11/11/11/11/11/10/01/11/11/10/00/01/11/01/10/01/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R20144107TGGCAAAACCTCCCAAAAAAAAAAAATATCGCAGCTGCTCCGATATTCATADmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R20144108GGCAAAACCTCCCAAAAAAAAAAAATATCGCAGCTGCTCCGATATTCATAADmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R20182858CTTGGACACCAGGTTTGGATCTGCGCCCTCCTCCGTGGGCTTCGCCTTCAA
chr3R20174200GGACACTGAGCCTCCTTCCATGCTCCTCTCTCGCTGTTCTCGTACACTAGA
chr3R20173030CTGATAGCTGTGATGGCTGATAAAGAACAGCGTCAAAAAATGTACCAATTADmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr3R20135884CGGCTTCCAGGGCGATAAATGCGAGAAGACCACCACTCTGTCCATGGTGGC