Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
205450593.97903328275358e-130.7091481069651690.5000567551708860.846905837525614
205454924.34384825266231e-100.4276829883221180.2250842760319970.941167274021663
205455044.34384825266231e-100.4276829883221180.2250842760319970.941167274021663
205454721.18196956514211e-090.260714519912410.2507909338012990.845310808274273
205455513.7816632075584e-090.6470632051643880.4062957271221890.913440384091769

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R20545059.CG.PASSAC=62GT0/01/11/10/01/10/00/00/01/10/00/10/00/00/01/10/00/01/10/00/00/00/01/10/01/10/00/01/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/00/00/01/01/10/00/00/10/00/01/11/11/10/01/11/10/00/00/11/10/00/00/01/11/11/10/00/00/00/01/10/00/00/00/01/10/00/00/01/01/10/00/00/00/00/00/00/01/10/00/10/00/01/10/01/10/00/01/00/00/01/10/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/11/11/10/00/10/00/00/00/00/00/00/10/00/01/10/00/01/11/11/10/00/00/00/00/10/01/10/00/00/00/00/01/10/01/10/00/00/00/00/01/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/00/01/00/00/01/10/00/00/10/00/00/00/00/00/00/11/10/00/1
chr3R20545492.TG.PASSAC=43GT0/01/11/10/01/10/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/01/01/10/00/00/00/00/01/11/10/00/01/10/00/00/00/10/00/00/00/01/11/11/10/00/00/00/01/10/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/10/00/10/00/01/10/01/10/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/11/11/00/01/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/11/10/00/0
chr3R20545504.GA,C.PASSAC=43,6GT0/01/11/10/01/10/00/00/01/10/00/20/00/00/00/00/00/01/10/00/00/00/00/00/02/20/00/02/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/01/01/10/00/00/00/00/01/11/00/00/01/10/00/00/00/10/00/00/00/01/11/11/10/00/00/00/01/10/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/10/00/10/00/01/10/01/10/00/01/00/00/01/10/00/20/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/11/11/00/01/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/02/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/11/10/00/2
chr3R20545504.GAAAAGAGTTAATAAGG,GGAAAGAGTTAATAAG,GTAAAGAGTTAATAAG.PASSAC=115,13,47GT1/13/33/31/13/31/10/01/13/31/10/30/00/01/11/11/10/03/31/11/11/11/11/20/03/31/20/03/01/11/10/00/00/01/13/31/10/11/20/01/00/01/20/00/03/30/01/10/13/30/11/11/00/03/03/30/00/01/10/10/03/33/10/01/23/30/01/11/11/31/01/11/10/03/33/33/30/00/01/10/03/30/11/00/10/03/31/11/10/00/03/31/01/11/11/01/11/21/13/31/10/30/00/03/30/13/31/11/13/11/11/03/31/10/30/11/01/11/11/11/11/11/21/10/01/13/30/01/21/10/00/13/33/11/13/11/11/10/01/10/00/20/10/01/11/10/11/13/33/33/30/00/10/03/31/01/10/31/00/00/00/01/21/10/00/00/00/00/11/01/13/11/11/11/13/30/11/11/13/31/11/11/10/01/23/30/00/01/23/01/11/13/31/10/00/10/10/01/11/11/11/21/33/31/10/1
chr3R20545472.CG.PASSAC=43GT0/01/11/10/01/10/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/01/01/10/00/00/00/00/01/11/00/00/01/10/00/00/00/10/00/00/00/01/11/11/10/00/00/00/01/10/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/10/00/10/00/01/10/01/10/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/11/11/00/01/00/00/00/00/00/00/00/00/00/00/00/00/01/11/11/10/00/00/01/10/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/11/10/00/0
chr3R20545551.GAAATTTGA,AAAATTTG.PASSAC=31,14GT0/02/21/20/01/00/00/00/02/20/00/00/00/00/00/00/00/02/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/02/20/00/00/01/10/00/00/00/02/02/20/00/00/00/00/02/21/00/00/02/20/00/00/00/10/00/00/00/01/01/11/10/00/00/00/01/10/00/00/00/02/20/00/00/00/01/10/00/00/00/00/00/00/01/10/00/10/00/01/10/01/20/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/02/20/00/00/00/00/11/00/10/00/10/00/00/00/00/00/00/00/00/00/00/00/01/01/11/00/00/00/02/20/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/02/20/00/00/01/00/00/01/10/00/00/00/00/00/00/00/00/00/11/10/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R20545059CCGTGCCTGCCAAAAATAGTTTAACACAGCGTGACCGCACCGATAACGATADmelanogaster-FlyFactorSurvey-prd_SOLEXA_5_FBgn0003145
chr3R20545492GATTCGTAAATAGTATTCATATGATAATTAACATAAGAAAAGAGTTAATAADmelanogaster-JASPAR_CORE-nub-MA0453.1
chr3R20545504GTATTCATATGATAATTAACATAAGAAAAGAGTTAATAAGGGCTTTCCTTADmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jigr1_SANGER_5_FBgn0039350 , Dmelanogaster-JASPAR_2014-KR-MA0452.2
chr3R20545504GTATTCATATGATAATTAACATAAGAAAAGAGTTAATAAGGGCTTTCCTTANA
chr3R20545472ATGTTACTATTATGGTAAGTGATTCGTAAATAGTATTCATATGATAATTAADmelanogaster-FlyFactorSurvey-CG12768_SANGER_5_FBgn0037206
chr3R20545551CTTACAAATGGTTTAAAATCGTTCGAAATTTGAAAGTAAACAAATTAAATANA