Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
208116161.33132906806741e-060.4065109898327410.001576690498784650.00248238536101393
208117575.91390466178866e-050.878556326586270.1396170207509620.118477782916947
207250460.731126861933880.005625275826466410.987848555794210.000231322234748184
207318290.1577983158740360.009402887355756010.577555941707220.000366003820993047
208036290.913431492670630.04421137769457460.6442630388130970.000474839593280774

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R20811616.CT.PASSAC=103GT0/00/01/10/01/10/01/11/00/00/00/00/00/01/11/10/00/01/10/01/11/11/10/01/10/01/11/10/00/01/11/11/11/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/01/01/10/10/00/10/00/01/11/00/00/00/01/11/10/00/10/00/00/00/01/11/11/10/00/01/11/11/11/10/10/01/10/01/10/00/00/11/11/11/10/01/10/01/10/00/01/10/10/00/00/00/10/00/00/01/11/11/11/11/10/00/00/01/10/01/10/00/00/00/01/10/01/11/10/00/00/00/11/11/00/01/01/11/11/10/00/00/00/11/10/00/00/01/11/11/11/11/10/01/10/01/01/11/11/11/10/00/01/10/00/00/00/01/10/01/11/10/10/01/11/11/10/00/01/11/11/10/00/00/01/10/01/11/11/11/10/01/11/11/10/00/01/11/11/10/00/00/01/01/10/00/0
chr3R20811757.TTGAT,TTAG,TTGG.PASSAC=2,45,95GT0/02/22/20/12/20/13/33/20/00/02/30/00/02/23/30/00/03/30/03/33/33/33/33/33/33/33/33/00/03/33/33/33/30/00/03/33/30/00/00/00/03/32/20/02/22/20/00/03/32/22/20/00/03/03/30/32/23/30/00/03/33/00/00/00/03/32/20/00/30/00/00/03/02/22/22/22/22/23/33/32/33/30/00/03/32/23/30/00/03/03/30/03/30/03/30/03/33/30/03/30/30/03/30/00/30/03/30/02/23/33/32/23/30/30/00/03/32/23/30/00/00/03/33/30/03/30/02/20/00/02/32/23/00/03/03/33/33/32/22/22/30/33/30/03/30/03/32/22/22/23/30/03/33/33/33/32/30/03/30/00/03/33/30/00/00/03/32/23/33/33/32/23/33/32/22/22/20/02/23/30/00/00/03/32/23/33/33/32/30/00/02/23/30/00/03/33/33/30/02/20/03/32/20/02/3
chr3R20725046.AG.PASSAC=81GT0/00/00/01/00/00/10/00/00/00/00/10/00/00/01/10/00/00/00/00/00/00/01/10/01/10/00/00/01/11/11/10/00/00/00/00/01/11/11/10/00/00/00/00/00/00/00/00/00/01/11/11/10/01/01/10/01/10/01/10/00/00/00/00/00/01/10/00/01/01/11/11/10/00/00/00/01/11/10/01/10/10/00/01/01/10/00/01/10/00/10/00/00/01/11/10/01/11/11/10/00/00/01/11/11/01/11/11/10/00/00/10/01/10/01/11/10/00/00/00/00/00/01/11/10/00/00/01/10/00/00/00/00/00/00/11/10/00/01/10/11/01/01/10/01/10/00/10/00/00/00/01/10/00/01/01/10/10/00/00/00/00/01/10/01/10/00/00/00/01/00/11/10/01/10/01/11/10/00/00/00/00/00/01/10/01/10/01/00/01/10/00/01/10/01/10/00/00/01/10/00/01/10/01/11/1
chr3R20731829.TTAGAT.PASSAC=107GT0/01/10/01/00/00/01/10/11/10/01/10/01/10/01/10/00/00/01/10/00/01/11/00/01/11/01/11/11/11/11/10/01/11/10/00/01/11/11/10/01/10/00/01/11/01/10/01/00/01/11/10/00/01/01/10/11/11/10/00/01/00/00/00/01/10/00/00/01/00/00/00/00/00/00/00/00/00/01/10/10/00/01/00/10/01/10/01/11/11/10/00/00/01/10/00/01/01/11/10/00/10/01/11/11/01/11/00/00/01/11/00/00/01/11/11/10/00/00/00/01/10/00/01/10/00/01/00/01/10/00/00/00/11/10/11/10/01/11/11/01/01/11/00/01/10/00/00/00/00/00/01/10/01/11/11/10/00/01/10/01/10/01/11/11/01/10/01/10/00/01/00/11/11/10/01/10/00/00/11/11/11/01/11/10/01/00/01/00/00/00/00/01/10/01/11/10/01/10/00/01/11/00/00/01/1
chr3R20803628.AAA.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R20803629.AAA,AAA,AAG.PASSAC=15,77,8GT2/22/22/20/02/00/00/00/00/00/00/00/00/00/00/00/02/22/20/02/00/00/00/00/00/02/02/20/21/02/20/00/00/00/00/00/00/02/00/00/00/00/00/00/00/00/00/02/20/00/00/03/00/00/20/02/02/20/00/00/02/00/20/02/02/20/02/20/02/03/03/33/30/01/01/12/02/22/22/00/02/10/02/00/32/02/10/00/03/00/02/20/02/23/00/02/20/00/00/02/22/00/00/00/00/30/02/00/02/02/12/22/00/00/00/00/02/20/02/20/00/02/00/00/00/02/20/10/10/02/00/22/12/00/02/12/00/00/00/00/00/20/00/00/00/00/02/22/22/22/10/00/02/10/00/00/12/00/02/00/00/00/00/02/20/02/20/02/20/02/00/20/00/02/02/22/20/00/02/20/00/00/00/00/00/02/00/02/02/12/20/02/20/00/00/12/20/02/20/00/00/00/22/20/02/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R20811616GAGATACAAATCAAAGATACAAATCGAAAGCAGAAAGAAAGTGGCTAGTGADmelanogaster-FlyFactorSurvey-Blimp.1_SANGER_5_FBgn0035625
chr3R20811757CCTTCGAAAAGGACATTGTGGTGTTTGATGGTTCAGAAGATTCAAGAAGTTNA
chr3R20725046CTTCTCAAAGTCCTGGACTCCCTTACCCGTCACCTTTGTGGAACTGGCGGG
chr3R20731829GGCAAAAATGTGTGATAATCTAATTTATCCCATCCCGATGATCTAAACTGA
chr3R20803628CGTTAATTACTCAGTTAAAAAAAAAATGCATTGTGAAATAACATAATTCATDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180
chr3R20803629GTTAATTACTCAGTTAAAAAAAAAATGCATTGTGAAATAACATAATTCATGDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768