Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
241654106.83318623693048e-130.8736704046349830.7487290201589890.836035720778623
241654412.96577706109852e-100.8706495665669420.8697942272065820.768666167634435
241654262.29834046719854e-070.3824427659275990.2477298467506250.918733528708886
241643422.86804775239822e-070.9650094502342350.7885846199043260.62716899542701
241628932.54875570832885e-060.2356420739428920.029982689654270.310467569900923

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R24165410.TA.PASSAC=173GT1/11/11/11/01/11/00/01/11/11/11/01/10/01/11/11/11/11/11/10/01/11/11/10/01/11/10/01/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/01/11/11/11/11/11/10/01/11/11/11/11/10/01/11/11/11/11/11/11/01/11/11/11/11/11/11/11/11/11/11/11/11/01/11/11/11/11/11/11/11/00/01/11/11/10/01/11/11/10/01/11/11/11/11/10/00/00/01/11/11/01/11/11/11/11/10/01/11/11/11/10/00/01/11/11/11/11/10/01/11/11/11/01/11/11/11/11/10/00/00/01/11/11/10/00/01/10/00/01/10/01/11/11/11/11/11/01/11/11/11/11/11/11/10/01/11/11/11/11/11/11/10/01/10/00/01/11/11/11/11/11/11/0
chr3R24165441.AAA.PASSAC=41GT1/10/00/00/00/00/00/01/10/01/10/00/00/00/00/01/10/00/01/00/01/10/10/00/00/10/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/01/10/00/00/00/01/10/01/11/10/01/10/01/10/00/11/10/01/10/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/01/10/00/01/00/01/10/10/00/00/01/11/01/10/01/10/00/00/10/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/01/11/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R24165425.TTT.PASSAC=5GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R24165426.TTT,TTT.PASSAC=187,11GT1/11/21/11/01/11/00/11/11/11/11/01/10/01/11/11/11/11/11/10/11/11/11/10/11/11/10/11/01/11/12/21/11/01/11/11/11/11/01/11/11/11/01/10/01/01/01/11/11/11/10/11/11/01/11/11/11/11/21/11/01/11/11/11/11/11/11/11/11/01/01/10/11/11/01/11/11/11/10/11/01/11/02/11/00/01/11/11/11/11/11/11/11/11/11/01/11/01/11/11/01/11/02/21/11/01/11/11/11/11/11/01/11/10/11/11/11/10/01/11/11/10/01/11/11/11/12/10/00/00/01/11/01/01/01/11/11/11/00/01/01/21/01/00/10/11/11/11/11/11/00/12/11/01/01/02/11/01/11/11/00/10/00/11/11/11/10/00/11/10/00/01/10/01/11/11/11/11/11/11/11/11/11/11/01/01/00/11/01/11/11/11/01/02/10/11/10/10/02/21/11/01/11/11/11/0
chr3R24164342.GA.PASSAC=32GT0/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/10/00/00/00/01/10/00/00/01/11/10/00/01/10/00/00/01/10/00/00/00/00/01/11/11/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/11/10/00/00/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/0
chr3R24162893.GT.PASSAC=87GT0/00/01/10/11/10/01/10/00/00/00/00/11/11/10/00/01/11/10/00/00/01/10/01/10/01/11/10/11/11/10/00/01/10/00/01/10/00/00/01/10/01/10/01/11/11/11/11/11/11/10/00/01/10/10/01/11/10/00/01/10/00/10/00/00/00/01/11/10/11/10/01/10/00/00/01/11/11/11/11/10/01/10/01/00/00/01/11/10/00/01/10/01/10/00/00/01/10/00/01/10/00/00/00/00/00/01/10/00/00/00/01/11/11/00/00/01/11/10/00/00/01/11/10/00/01/10/00/01/11/10/01/10/00/00/00/00/01/11/10/00/00/01/11/10/00/00/00/01/11/11/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/00/00/00/01/10/01/10/00/00/01/10/00/00/00/00/01/11/11/11/11/00/00/01/10/00/00/11/11/11/10/00/01/10/10/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R24165410ATTGTCGTGTTTTTATCGCGACACTGGCTGGAATTTTTTTTGTTTTTCTCTDmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172
chr3R24165441AATTTTTTTTGTTTTTCTCTGATAAACCAACCCAATTATTTGCTTTTTCGG
chr3R24165425TCGCGACACTGGCTGGAATTTTTTTTGTTTTTCTCTGATAAACCAACCCAADmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-NFAT_SANGER_5_FBgn0030505 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R24165426CGCGACACTGGCTGGAATTTTTTTTGTTTTTCTCTGATAAACCAACCCAATDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R24164342CTGCTGGATCTCCATTTTCAGCGTGATGATCTCGCGGGCGTGCGGATCATC
chr3R24162893AAATGGGTTAAGGGTTCGGATTTTGATCCGACAAAATACCAGAAAATTTTA