Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
268795222.28113138701519e-130.8128650221725180.2068783989894840.518695813743056
268795312.28113138701519e-130.8128650221725180.2068783989894840.518695813743056
268795504.68275885636291e-130.621675441965520.0747152748871050.206252706172685
268796956.88185260091131e-090.5725523205457020.169959414648850.424955969843084
268804697.25344903219072e-080.4596466587155930.07817807954708470.0740285984445463

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R26879522.TG.PASSAC=115GT1/11/10/01/00/00/01/10/01/10/00/10/01/10/00/00/00/01/10/00/01/11/11/11/11/11/11/10/01/10/00/00/01/10/01/11/11/10/00/00/00/00/01/10/00/01/11/11/10/00/01/10/01/11/11/11/11/10/01/11/11/10/01/10/00/01/10/01/11/00/01/11/10/00/00/00/01/11/11/10/00/00/01/11/00/01/11/11/11/11/10/01/11/11/11/10/00/00/01/11/11/01/11/11/10/11/10/01/10/01/11/10/00/01/11/10/01/11/11/11/10/00/01/10/00/01/11/11/11/11/10/10/00/11/10/11/10/01/11/11/11/10/10/01/10/01/11/10/00/00/00/00/00/01/11/01/10/11/11/10/00/00/00/01/10/01/10/00/00/01/11/10/01/11/10/01/10/01/10/01/11/11/11/10/00/00/00/00/00/10/01/10/00/00/01/10/00/01/11/11/11/10/00/00/01/0
chr3R26879531.TC.PASSAC=115GT1/11/10/01/00/00/01/10/01/10/00/10/01/10/00/00/00/01/10/00/01/11/11/11/11/11/11/10/01/10/00/00/01/10/01/11/11/10/00/00/00/00/01/10/00/01/11/11/10/00/01/10/01/11/11/11/11/10/01/11/11/10/01/10/00/01/10/01/11/00/01/11/10/00/00/00/01/11/11/10/00/00/01/11/00/01/11/11/11/11/10/01/11/11/11/10/00/00/01/11/11/01/11/11/10/11/10/01/10/01/11/10/00/01/11/10/01/11/11/11/10/00/01/10/00/01/11/11/11/11/10/10/00/11/10/11/10/01/11/11/11/10/10/01/10/01/11/10/00/00/00/00/00/01/11/01/10/11/11/10/00/00/00/01/10/01/10/00/00/01/11/10/01/11/10/01/10/01/10/01/11/11/11/10/00/00/00/00/00/10/01/10/00/00/01/10/00/01/11/11/11/10/00/00/01/0
chr3R26879550.CA,G,GCTTTTA.PASSAC=1,5,110GT3/33/30/03/00/00/03/30/00/00/00/30/03/30/00/00/00/03/30/00/03/33/33/33/33/30/03/30/03/30/00/00/03/30/03/33/33/30/00/00/00/00/03/30/00/03/33/33/30/00/03/30/03/03/03/33/23/30/03/33/33/30/03/30/00/03/30/03/33/00/03/33/30/00/00/00/03/33/33/30/00/00/03/03/00/00/03/33/33/33/30/03/33/33/33/30/00/00/03/33/33/03/33/33/30/33/30/03/30/03/33/30/00/03/33/30/03/33/33/33/30/00/03/30/00/03/33/13/23/33/30/30/00/33/30/33/30/03/33/33/03/20/30/03/30/03/33/30/00/00/00/00/00/03/33/03/30/33/03/30/00/00/00/00/00/03/00/00/00/03/33/00/03/33/30/03/30/03/30/03/33/33/33/30/00/00/00/00/00/30/00/00/00/00/03/30/00/03/33/33/33/20/00/00/03/2
chr3R26879550.CCTTTTA.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr3R26879695.GA.PASSAC=96GT1/11/10/00/00/00/01/10/00/00/00/10/00/00/00/00/00/01/10/00/01/11/11/11/11/10/01/10/11/10/00/00/00/00/01/11/11/10/00/00/00/00/01/10/00/01/11/10/00/00/00/00/01/11/11/11/11/10/01/11/10/00/01/10/01/11/10/01/10/00/01/11/10/00/00/00/00/00/01/10/00/00/01/11/00/00/01/11/11/11/10/01/11/11/11/10/00/00/01/10/01/01/10/01/11/01/10/01/10/01/11/10/00/01/11/10/01/11/11/10/00/00/01/10/00/01/11/10/00/00/00/10/00/11/10/10/00/00/01/11/11/00/10/01/10/01/11/00/00/00/00/00/00/00/01/01/01/01/11/10/00/00/00/00/00/01/00/00/00/01/11/10/01/10/00/01/10/01/10/01/11/01/11/10/01/10/00/00/00/10/00/00/00/01/11/01/10/01/11/11/11/10/00/00/01/0
chr3R26880469.GC.PASSAC=125GT0/00/01/11/11/11/10/00/01/11/11/01/11/11/11/10/00/00/01/11/10/00/00/00/00/01/10/01/10/01/11/11/11/11/10/00/00/01/11/11/11/11/10/01/11/10/00/01/11/11/11/11/10/00/00/00/00/01/10/00/01/11/10/01/11/10/01/10/01/11/10/00/01/11/11/11/11/11/10/01/11/10/00/00/11/11/10/00/00/00/01/10/00/00/00/01/11/11/10/01/10/10/01/10/00/10/01/10/01/10/00/01/11/11/00/01/10/01/10/01/10/01/10/00/01/10/00/01/11/11/10/11/11/00/01/01/11/11/10/00/01/10/01/11/11/10/00/01/11/11/11/11/11/10/00/10/01/01/11/11/11/11/11/11/11/10/01/11/11/10/00/01/10/01/11/11/11/11/11/11/10/00/00/01/11/10/00/00/01/01/11/11/11/11/10/11/11/10/00/00/00/01/01/11/11/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R26879522CGGTGTCAAGTCTTCGCAAGCTCATGCATCGCTTCGATCTGTTTATTTCGGDmelanogaster-FlyFactorSurvey-CG3407_SOLEXA_2.5_FBgn0031573
chr3R26879531GTCTTCGCAAGCTCATGCATCGCTTCGATCTGTTTATTTCGGCCTTACCCT
chr3R26879550TCGCTTCGATCTGTTTATTTCGGCCTTACCCTTTTCGGTGAAAAACTACAG
chr3R26879550TCGCTTCGATCTGTTTATTTCGGCCTTACCCTTTTCGGTGAAAAACTACAG
chr3R26879695GTTCGACCAGGGCTGGTTGTTTTTGTATATTGGCGTTGCCAGATTATCGAADmelanogaster-FlyFactorSurvey-Aef1_SANGER_5_FBgn0005694
chr3R26880469TATATATTTTAATTTTATACTTTTGGGGTTCGGATATTATTCTTATGTACADmelanogaster-JASPAR_2014-SU(HW)-MA0533.1