Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
94684008.33097687305643e-070.5778834110467090.42356997749570.921495669381242
94688710.000110950541317740.2926833037453390.3010950498940530.702247756519611
94265500.2150781584885390.0203258949165790.000340418777219390.0134429005487417
94309600.7575596376726160.6324265118719270.0004192697768557670.00326813784224153
94500170.0004482275908262580.9186610336765990.793299149998390.803745308887904

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R9468400.CT.PASSAC=80GT0/00/00/00/10/00/01/10/01/11/10/11/10/00/00/01/10/01/10/01/00/00/00/01/10/01/10/01/00/00/00/00/01/10/00/00/00/00/01/11/11/11/10/00/01/11/10/00/01/11/11/11/10/00/01/10/00/00/00/01/11/10/01/11/10/00/10/00/00/01/11/11/10/00/00/00/00/00/00/01/10/00/01/10/11/10/01/10/00/01/00/00/00/01/11/11/10/01/10/00/00/01/10/00/00/00/01/11/10/00/01/10/00/00/00/00/00/01/10/01/10/00/00/00/01/10/01/10/01/10/00/00/00/01/10/00/01/10/01/11/11/00/01/10/00/01/10/00/00/01/10/00/00/00/01/00/01/10/00/00/00/01/10/00/00/00/01/10/00/00/10/01/10/01/10/01/11/10/00/01/11/11/10/00/01/11/11/11/10/00/00/00/00/00/00/10/01/10/01/10/00/00/10/01/10/0
chr3R9468871.CG.PASSAC=137GT1/11/11/10/10/01/10/01/10/00/00/10/11/11/11/10/01/10/01/10/01/11/11/10/01/11/11/10/11/11/11/11/11/11/11/11/11/11/10/01/10/00/01/11/10/00/00/01/10/00/00/00/01/11/11/11/11/11/11/10/00/01/10/00/00/01/01/11/11/10/00/00/01/01/11/11/11/11/11/10/01/11/10/01/00/01/10/01/11/11/11/11/11/10/00/00/01/10/00/01/11/10/00/00/01/11/10/00/01/11/10/01/11/11/11/11/11/10/01/10/01/11/11/10/00/01/00/01/10/01/11/11/11/10/01/11/10/01/10/00/10/11/10/01/11/10/01/11/11/10/01/11/11/11/10/11/10/01/11/11/11/11/11/11/10/01/10/01/11/11/11/10/01/10/01/10/00/01/11/10/01/10/01/11/10/00/00/00/01/11/11/11/11/11/10/11/10/01/11/11/11/01/01/10/01/1
chr3R9426550.TACGCACCACATACCGAACTGAAAGTGCTTTCTGGTTGCCTGCGTAGATT,TACGCACCACATACCGAACTGAAAGTACTTTCTGGTTGCCTGCGTAGAT,TACGCACCACATGCCGAACTGAAAGTGCTTTCTGGTTGCCTGCGTAGAT.PASSAC=5,5,8GT0/00/00/03/00/00/00/00/00/00/00/30/00/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/00/00/10/01/00/03/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/03/30/00/00/00/00/00/00/00/00/00/30/00/00/00/01/10/00/03/30/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/20/02/20/00/00/00/00/00/00/00/00/3
chr3R9430960.TGTGTGTGTGATGTGA,TGTGT,TGTGTGTGT,TGTGTGTGTGT,TGTGTGTGTGTGA.PASSAC=1,1,158,80,1GT3/03/33/30/40/03/40/03/04/33/04/34/33/03/44/33/03/04/30/03/43/00/04/30/04/03/04/30/33/03/03/33/00/03/04/33/43/04/33/43/03/30/04/33/33/04/33/04/34/43/03/04/33/04/35/04/00/03/43/03/04/33/34/33/04/34/33/03/30/04/03/33/33/03/43/33/03/33/33/43/03/03/03/03/03/03/03/33/03/03/23/04/33/04/34/30/03/03/00/04/30/34/34/34/33/40/03/33/04/33/03/03/04/04/00/03/33/34/04/00/30/04/33/04/33/03/03/03/44/33/03/03/04/33/30/44/30/04/34/34/33/03/03/03/04/04/03/03/03/04/03/00/03/04/30/44/30/34/33/34/33/33/44/03/00/04/33/03/34/04/30/30/04/00/33/33/03/30/04/03/03/00/03/04/03/04/30/04/34/03/03/03/44/34/30/34/33/04/00/03/00/01/43/33/04/0
chr3R9450017.CT.PASSAC=79GT0/00/00/01/00/01/00/00/01/11/11/00/00/00/00/00/00/00/00/01/01/10/00/01/10/00/00/01/10/00/00/01/11/10/00/01/11/10/00/00/01/11/10/00/01/10/01/10/01/10/00/00/00/00/01/10/00/01/10/01/10/01/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/01/10/01/11/10/01/10/00/00/01/11/01/10/01/11/10/00/01/11/10/01/10/01/10/10/00/11/11/11/11/11/11/10/00/00/01/10/00/00/01/11/11/10/00/00/01/10/00/00/00/01/10/00/00/00/00/00/01/10/00/01/11/11/01/10/01/11/10/00/00/01/10/00/00/00/00/10/00/00/01/10/01/10/01/10/00/00/00/00/00/00/00/01/10/00/10/01/11/11/10/01/11/10/00/00/00/01/10/01/00/01/10/00/00/00/01/10/00/01/11/10/00/00/01/11/10/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R9468400CTTCAGCAAATCTGTCACCACCTGCTCCGAATCGAAGGTGATGAAGCAGAADmelanogaster-FlyFactorSurvey-amos_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-amos_da_SANGER_10_FBgn0003270 , Dmelanogaster-FlyFactorSurvey-ase_da_SANGER_10_FBgn0000137 , Dmelanogaster-FlyFactorSurvey-ase_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-ato_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-ato_da_SANGER_10_FBgn0010433 , Dmelanogaster-FlyFactorSurvey-CG12605_SANGER_10_FBgn0035481 , Dmelanogaster-FlyFactorSurvey-CG12605_SOLEXA_5_FBgn0035481 , Dmelanogaster-FlyFactorSurvey-CG17181_SANGER_5_FBgn0035144 , Dmelanogaster-FlyFactorSurvey-CG17181_SOLEXA_5_FBgn0035144 , Dmelanogaster-FlyFactorSurvey-dei_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-dei_da_SANGER_5_FBgn0008649 , Dmelanogaster-FlyFactorSurvey-esg_SANGER_2.5_FBgn0001981 , Dmelanogaster-FlyFactorSurvey-Fer3_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Fer3_da_SANGER_5_FBgn0037937 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_3_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_3_FBgn0011277 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_4_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_4_FBgn0011277 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-HLH4C_da_SANGER_5_FBgn0011277 , Dmelanogaster-FlyFactorSurvey-HLH54F_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-HLH54F_da_SANGER_5_FBgn0022740 , Dmelanogaster-FlyFactorSurvey-l(1)sc_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-l(1)sc_da_SANGER_5_FBgn0002561 , Dmelanogaster-FlyFactorSurvey-net_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-net_da_SANGER_10_FBgn0002931 , Dmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_2_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_2_FBgn0032651 , Dmelanogaster-FlyFactorSurvey-sage_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-sage_da_SANGER_5_FBgn0037672 , Dmelanogaster-FlyFactorSurvey-sc_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-sc_da_SANGER_10_FBgn0004170 , Dmelanogaster-FlyFactorSurvey-scrt_SANGER_2.5_FBgn0004880 , Dmelanogaster-FlyFactorSurvey-scrt_SOLEXA_2.5_1_FBgn0004880 , Dmelanogaster-FlyFactorSurvey-scrt_SOLEXA_2.5_2_FBgn0004880 , Dmelanogaster-FlyFactorSurvey-Side_SANGER_5_FBgn0032741 , Dmelanogaster-FlyFactorSurvey-sna_FlyReg_FBgn0003448 , Dmelanogaster-FlyFactorSurvey-sna_SANGER_10_FBgn0003448 , Dmelanogaster-FlyFactorSurvey-sna_SOLEXA_5_FBgn0003448 , Dmelanogaster-FlyFactorSurvey-tap_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-tap_da_SANGER_5_FBgn0015550 , Dmelanogaster-FlyFactorSurvey-wor_SANGER_2.5_FBgn0001983 , Dmelanogaster-FlyFactorSurvey-wor_SOLEXA_2.5_FBgn0001983
chr3R9468871TTGTTAGCATTTGTTTATTTACTTCGTTTTAGTTTTATACTTACTCTCAGTDmelanogaster-FlyFactorSurvey-bab1_SANGER_5_FBgn0004870
chr3R9426550TTCAACCATTTTTTGTGCCGTGCATACGCACCACATACCGAACTGAAAGTGNA
chr3R9430960TTTGCGTTCGCCAGTGTGTGTGTGTGTGTGTGTGAGTGTGTTTTCCATAGCNA
chr3R9450017CTTATCAAGTTAGTTGGTATACAACAATTTGGGGTTAACCATGAATATTTC