Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
96650097.7073235578253e-060.8026971946161650.7302440437819420.88602211738099
97650440.2538962840792130.04885216091689870.0001753331003123610.618137550107947
96643850.0002100867805105320.2548337969958950.1732006324546190.903683305199886
97650570.564477861501760.03801252084204280.0002125144062268120.665009131941321
97651680.2074271821976460.03415355923514870.0002327851106065310.222804086289128

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr3R9665009.GA.PASSAC=78GT0/01/10/01/10/01/10/01/11/11/10/10/10/00/11/10/00/00/00/01/00/01/11/10/01/10/00/01/00/00/00/01/11/10/00/01/11/11/11/10/01/10/00/01/11/00/01/10/00/01/10/00/00/00/01/10/01/11/10/00/01/10/10/00/01/11/01/10/00/00/01/11/10/00/00/00/00/00/00/00/00/00/00/01/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/01/01/10/00/00/10/00/00/00/01/10/01/10/00/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/00/00/01/10/00/00/00/00/01/00/00/01/10/01/10/00/00/00/00/01/11/10/11/11/01/10/00/00/01/11/10/00/01/10/01/11/11/11/10/01/10/00/00/00/01/10/00/00/01/11/10/01/10/01/10/10/00/01/10/00/01/10/01/10/00/00/01/10/00/10/00/01/1
chr3R9765044.GA.PASSAC=144GT0/00/01/11/10/01/11/11/11/10/01/11/11/11/01/11/11/10/01/10/01/11/11/11/11/11/11/11/10/00/01/10/01/10/00/01/11/10/01/10/00/00/01/11/11/10/01/10/00/00/00/01/11/11/01/10/01/11/11/11/11/10/01/11/11/10/11/10/01/11/11/11/10/00/00/01/10/00/00/00/00/01/11/11/01/11/10/00/01/11/00/01/11/11/11/10/01/11/10/00/01/01/10/00/00/00/01/11/11/11/11/11/10/01/01/11/10/01/10/01/10/01/11/11/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/10/01/00/01/11/11/11/11/11/11/10/00/01/10/00/01/01/11/10/00/01/11/11/11/11/11/01/11/11/11/11/11/11/10/00/01/11/11/11/11/01/10/01/11/10/00/00/11/11/10/1
chr3R9664385.TTT.PASSAC=149GT0/01/11/10/11/11/00/00/00/01/11/01/11/11/10/01/10/01/10/01/11/10/00/01/00/00/01/10/10/00/01/11/11/11/11/01/11/11/01/11/11/11/01/10/00/01/00/01/00/00/01/11/01/00/11/01/00/01/01/11/10/01/11/11/01/11/11/10/00/00/01/01/10/01/11/11/10/00/01/10/01/01/11/01/01/01/01/11/11/01/01/10/00/01/11/11/11/01/11/11/11/00/01/11/10/10/01/11/11/00/01/11/11/10/11/10/01/11/11/11/11/11/01/10/01/11/11/01/01/10/01/01/10/11/11/01/11/11/11/11/01/00/01/11/00/00/00/01/11/11/11/10/00/00/00/01/01/01/00/01/11/10/00/01/11/01/11/11/11/11/00/11/10/01/01/11/11/10/01/11/10/00/00/01/01/01/00/01/01/10/01/01/11/10/00/10/01/11/11/10/01/01/11/11/11/0
chr3R9765057.TG.PASSAC=140GT0/00/01/11/10/01/11/11/11/10/01/11/11/11/01/11/11/10/01/10/01/11/11/11/11/11/11/11/10/00/01/10/01/10/00/01/11/10/01/10/00/00/01/11/11/10/01/10/00/00/00/00/01/11/01/10/01/11/11/10/01/10/01/11/11/10/11/10/01/11/11/11/10/00/00/01/10/00/00/00/00/01/11/11/01/11/10/00/01/11/00/01/11/11/11/10/00/01/10/00/01/01/10/00/00/00/01/11/11/11/11/11/10/01/01/11/10/01/10/01/10/01/11/11/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/11/10/00/01/00/01/11/11/11/11/11/11/10/00/01/10/00/01/01/11/10/00/01/11/11/11/11/11/01/11/11/11/11/11/11/10/00/01/11/11/11/10/11/10/01/11/10/00/00/11/11/10/1
chr3R9765167.AAA,ATA,ATATA.PASSAC=19,7,1GT0/00/00/01/00/00/10/00/00/00/00/10/00/00/01/10/00/00/00/00/00/00/01/00/01/10/00/00/00/00/00/00/00/01/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/02/02/20/00/10/00/00/00/00/00/00/00/03/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/02/00/00/00/00/00/02/20/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/10/00/00/02/00/00/00/00/00/00/00/00/00/00/01/10/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/1
chr3R9765168.AAA,AATA.PASSAC=6,106GT0/00/22/20/00/00/00/22/20/20/00/20/00/00/00/02/20/20/00/00/00/02/20/02/00/00/02/20/00/00/00/00/00/00/00/00/02/20/20/00/00/00/02/22/22/00/02/00/00/00/00/00/02/00/22/00/02/00/02/20/01/00/02/22/02/20/20/00/02/00/02/22/00/00/00/02/20/00/00/00/00/02/22/02/02/20/00/00/00/20/20/00/22/00/22/20/00/02/20/00/00/21/00/00/00/00/02/21/02/01/02/22/00/20/02/02/00/00/00/02/00/02/02/22/02/20/02/01/02/20/02/00/00/20/22/00/22/20/02/20/02/02/02/22/00/02/20/02/22/20/02/22/02/22/20/00/20/20/22/22/22/21/00/02/20/00/00/00/00/00/00/02/22/20/00/22/22/02/02/22/02/02/02/20/22/00/02/20/20/00/20/02/00/02/20/22/20/02/00/20/00/00/22/02/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr3R9665009CTCCAAGACTTCCCGTATTCTCTGGCATTTTTCGGAATCGCTAAGTCCCAGDmelanogaster-JASPAR_2014-STAT92E-MA0532.1
chr3R9765044CTCTGAACTAAGAGGGCCAGGCTCGAGAGCACTGCAATTAAACGGTGTGAGDmelanogaster-FlyFactorSurvey-ftz.f1_FlyReg_FBgn0001078 , Dmelanogaster-FlyFactorSurvey-vnd_FlyReg_FBgn0003986
chr3R9664385ATATTATTTTTTTAGATGGTTTTTTTATGCTTACGTGGTTCTTTTAAATATDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-jigr1_SANGER_5_FBgn0039350 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R9765057GGGCCAGGCTCGAGAGCACTGCAATTAAACGGTGTGAGTTTTTAAAATAACDmelanogaster-FlyFactorSurvey-CG34031_Cell_FBgn0054031
chr3R9765167GCCTTCAAATATTGCTAAAAAAAAAATCAATTTTGTTGAATAAAAATTCGTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr3R9765168CCTTCAAATATTGCTAAAAAAAAAATCAATTTTGTTGAATAAAAATTCGTTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768