Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
851552.12757397110944e-100.03467965979115540.210254693870160.118965317678857
914303.97815445012879e-100.2220526015690610.8270320620420260.392212200715367
898775.58270328980998e-100.01904423839138970.2125228469935770.0819843084510626
919326.81109939920457e-100.08307784887935280.2402984190884570.0497400066793507
617907.3512733673568e-100.01626062342644950.1458254252043820.086342807060883

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chr485155.CG.PASSAC=96GT0/00/01/10/01/11/11/11/10/00/00/01/01/10/01/11/10/01/10/01/10/00/00/01/11/11/11/10/01/11/10/00/00/00/00/00/00/00/01/11/11/10/00/01/11/10/01/10/01/11/10/00/01/11/11/11/11/11/10/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/11/11/11/10/01/10/01/10/01/10/00/01/11/11/10/01/10/00/01/10/00/00/01/10/01/10/01/10/01/10/00/00/01/11/11/11/10/01/11/10/00/01/11/10/01/10/01/11/11/11/11/00/01/10/00/00/00/00/00/01/11/10/11/01/11/11/10/01/11/11/10/01/10/01/10/00/01/10/01/10/00/01/11/11/10/00/00/00/00/00/01/11/10/01/10/00/00/00/01/10/00/01/10/00/01/10/01/10/00/00/00/00/00/00/00/00/01/11/10/01/11/11/10/00/00/01/10/0
chr491430.TC.PASSAC=90GT0/00/01/10/01/11/10/00/00/00/00/00/01/10/01/10/00/01/10/01/10/00/00/00/01/11/10/00/01/11/10/00/00/00/00/00/00/00/01/11/11/10/00/01/11/10/01/11/11/11/10/00/01/11/11/11/11/11/10/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/11/11/11/10/01/10/01/10/00/00/00/01/11/11/10/01/10/00/01/10/00/00/01/10/01/10/01/10/01/10/00/00/01/11/11/11/10/01/11/00/00/01/11/10/01/10/01/11/11/01/10/00/01/10/00/00/00/00/00/01/11/10/11/11/10/01/10/01/11/11/10/01/10/01/10/00/01/10/01/10/00/00/01/11/10/00/00/00/00/00/01/11/10/01/10/00/01/11/11/10/00/01/10/00/01/10/01/10/00/00/00/01/10/00/00/00/01/11/10/01/11/11/10/00/00/01/10/0
chr491430.TTT.PASSAC=2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chr489877.TG.PASSAC=95GT0/00/01/10/01/11/11/11/10/00/00/01/11/10/01/11/10/01/10/01/10/00/00/01/11/11/11/10/01/10/00/00/01/10/00/00/00/00/01/11/11/10/00/01/11/10/01/10/01/11/10/00/01/11/11/11/11/11/10/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/11/11/11/10/01/10/01/10/01/10/00/01/11/11/10/01/10/00/01/10/00/00/01/10/01/10/01/10/01/10/00/00/01/11/11/11/10/01/11/10/00/01/11/10/01/10/01/11/11/11/11/10/01/10/00/00/00/00/00/01/11/10/10/01/11/11/10/01/11/11/10/01/10/01/10/00/01/10/01/10/00/01/11/11/10/00/00/00/00/00/01/11/10/01/10/00/00/00/01/10/00/01/10/00/01/10/01/10/00/00/00/00/00/00/00/00/01/11/10/01/01/11/10/00/00/01/10/0
chr491932.AT.PASSAC=91GT0/00/01/10/01/11/11/10/00/00/00/01/11/10/00/01/10/01/10/01/10/00/00/01/11/11/11/10/01/11/10/00/00/00/00/00/00/00/01/11/10/00/00/01/11/10/01/11/11/11/10/00/01/11/11/11/11/10/00/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/10/01/11/10/01/10/01/10/01/10/00/01/11/11/10/01/10/00/01/10/00/00/01/10/01/10/01/10/01/10/00/00/01/11/11/11/10/01/11/10/00/01/11/10/01/10/01/11/11/11/11/10/01/10/00/00/01/10/00/01/11/10/00/01/11/10/00/01/11/11/10/01/10/01/10/00/01/10/01/10/00/01/11/11/10/00/00/00/00/00/01/11/10/01/10/00/00/00/01/10/00/01/10/00/01/10/01/10/00/00/00/01/10/00/00/00/01/11/10/01/11/11/10/00/00/01/10/0
chr461790.CT.PASSAC=96GT0/00/01/10/01/11/11/11/10/00/00/01/11/10/01/11/10/01/10/01/10/00/00/01/11/11/11/10/01/00/00/00/00/00/00/00/00/00/01/11/11/10/00/01/11/10/01/11/11/11/10/00/01/11/11/11/11/11/10/00/01/10/00/01/11/10/00/00/00/01/10/00/00/00/00/00/00/01/11/11/11/10/01/10/01/10/01/10/00/01/11/11/10/01/10/00/01/10/00/00/01/10/01/10/01/10/01/10/01/10/01/11/11/11/10/01/11/10/00/01/11/10/01/10/01/11/11/11/11/10/01/10/00/00/00/00/00/01/11/10/10/01/11/11/10/01/11/11/10/01/10/01/10/00/01/10/01/10/00/01/11/11/10/00/00/00/00/00/01/11/10/01/10/00/00/00/01/10/00/01/10/00/01/10/01/10/00/00/00/00/00/00/00/00/01/11/10/01/11/11/10/00/00/01/10/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chr485155CTAGTCCGAAAATACAACATAATGCCACTCCTTAGACCAGGCCATATGAGC
chr491430TTCTAGTAACTACAGCCCTTTTTTTGTGGAAAGGTGTGAAGATGGAGAACADmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr491430TTCTAGTAACTACAGCCCTTTTTTTGTGGAAAGGTGTGAAGATGGAGAACADmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_NAR_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chr489877ATTCTTGTTATAATTTTTTTTGATTATTTAATGCTAATCGAGCCATTCGATDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768
chr491932CGTGACTACTTTAGAATAAAAAATATAAATGTTCTGTGAATCGGTTCCCTADmelanogaster-FlyFactorSurvey-jigr1_SANGER_5_FBgn0039350 , Dmelanogaster-FlyFactorSurvey-zen_FlyReg_FBgn0004053
chr461790ATATAAAATATCCTCTTCTTTCCACGCATATCTCGCCGGACCTACAAATGC