Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
152175443.57211124550156e-140.1884357412692150.9070790102644070.0823351684434408
152176193.57211124550156e-140.1884357412692150.9070790102644070.0823351684434408
152178744.74234237042874e-110.548280807796210.5353280532968330.16152188445241
152169034.97819107691951e-100.7171096192711880.6462826078621810.99822408766261
152175662.36750658111336e-080.06819141863067340.897835437454310.364807829291331

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX15217544.TC.PASSAC=75GT1/10/01/11/10/00/01/11/11/11/10/00/01/11/10/01/10/01/10/00/01/10/01/11/10/00/00/00/00/01/10/00/00/01/10/01/10/00/00/00/01/11/11/10/01/11/10/01/10/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/01/11/10/00/00/00/01/11/10/00/01/10/01/11/10/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/01/10/00/01/10/01/11/10/00/00/01/10/00/01/10/01/10/01/10/00/00/00/00/00/00/01/11/10/00/01/10/01/10/01/10/01/10/00/01/10/00/00/00/01/10/00/00/00/01/10/00/01/10/01/10/01/11/11/10/00/00/01/11/10/00/01/11/11/10/00/01/10/01/10/00/01/10/00/00/01/10/01/10/00/01/11/10/00/01/10/01/1
chrX15217619.AC.PASSAC=76GT1/10/01/11/10/00/01/11/11/11/10/00/01/11/10/01/10/01/10/00/01/10/01/10/00/00/00/00/00/01/10/00/00/01/10/01/10/00/00/00/01/11/11/10/01/11/11/11/10/01/11/10/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/01/11/10/00/00/01/11/11/10/00/01/10/01/11/10/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/01/10/00/01/10/01/11/10/00/00/01/10/00/01/10/01/10/01/10/00/00/00/00/00/00/01/11/10/00/01/10/01/10/01/10/01/10/00/01/10/00/00/00/01/10/00/00/00/01/10/00/01/10/01/10/01/11/11/10/00/00/01/11/10/00/01/11/11/10/00/01/10/01/10/00/01/10/00/00/01/10/01/10/00/01/11/10/00/01/10/01/1
chrX15217874.CA.PASSAC=67GT0/00/01/11/10/00/01/11/11/11/10/00/01/11/10/01/10/01/10/00/01/10/01/11/10/00/00/00/00/01/10/00/00/01/10/01/10/00/00/00/01/11/11/10/01/11/11/11/10/01/11/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/01/11/10/00/00/01/11/11/10/00/00/00/01/11/10/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/01/10/00/01/10/01/10/01/10/00/00/00/00/00/00/01/10/00/00/01/10/01/10/01/10/01/10/00/01/10/00/00/00/01/10/00/00/00/01/10/00/01/10/01/10/00/00/00/00/00/00/01/11/10/00/01/11/11/10/00/01/10/00/00/00/01/10/00/00/01/10/00/00/00/01/11/10/00/01/10/01/1
chrX15216903.CT.PASSAC=92GT1/10/01/11/11/10/01/11/11/11/10/01/11/11/11/10/00/01/10/00/01/11/11/11/11/10/00/01/11/11/10/00/00/01/10/01/10/00/00/00/01/11/11/10/01/11/11/11/10/01/11/10/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/00/00/01/00/01/11/11/10/00/00/01/11/11/10/00/01/11/11/11/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/01/11/10/01/10/00/01/10/01/11/10/01/11/11/10/00/00/00/01/11/11/10/00/00/01/10/00/00/01/11/10/00/01/11/11/10/01/10/01/10/00/01/10/01/10/00/01/10/01/10/00/01/10/00/01/10/01/10/01/11/11/10/00/00/01/10/00/00/01/11/11/10/00/01/10/01/10/01/11/10/00/00/01/10/01/10/00/01/10/00/00/01/11/11/1
chrX15217565.AAA.PASSAC=7GT0/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/10/00/00/00/00/00/00/0
chrX15217566.AAA,AAA.PASSAC=100,40GT1/10/00/12/10/10/02/11/12/10/10/00/02/12/10/12/10/00/10/00/00/10/02/11/00/10/01/00/00/02/10/10/00/11/20/12/10/10/00/00/02/12/02/10/01/01/21/00/20/02/12/10/00/00/00/00/00/00/10/00/10/00/10/01/00/11/10/00/10/10/00/10/00/02/11/10/10/00/00/12/12/10/00/11/00/00/22/00/00/00/02/10/00/00/12/10/10/00/00/00/10/00/00/00/02/11/00/01/10/00/00/12/11/10/11/00/00/00/00/12/11/10/00/00/11/00/10/01/20/00/00/02/00/00/00/00/00/00/10/01/11/20/00/10/10/01/10/01/00/02/10/00/00/10/00/00/00/02/10/10/00/00/11/10/00/12/10/02/10/01/01/01/10/00/00/01/22/10/00/02/10/00/00/10/02/10/01/00/00/02/20/00/01/00/10/01/10/00/00/01/10/00/01/10/02/1

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX15217544CCCCTGCTCCCCCCGCTCACCATGTACAGTTGCAATGAAAAAAAAAACAGC
chrX15217619TGAGGTTAGGTTCGAACGCGGCTGATTGACTGCTGCTTTGCGTAATGCTAT
chrX15217874AAGAAAAGAGGGTGGACCCAATTGCTCTTGATTACTGCTAGCAATGGCTAG
chrX15216903GTAACTTGTAAATTACACGTATGCCTTATAATCGAAAAAATTTTTTTTGTC
chrX15217565ATGTACAGTTGCAATGAAAAAAAAAACAGCTGAGCAGGCCGAATAATGCGCDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chrX15217566TGTACAGTTGCAATGAAAAAAAAAACAGCTGAGCAGGCCGAATAATGCGCADmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768