Reference allele is: Minor

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
162795581.69229703854164e-060.9413034476550260.1872974858550930.0543897759322028
162041744.33535835463506e-050.6374979651387040.7903872566946990.310203815865992
162798170.0001754000747628960.8341063567870190.824735591590530.296385873534315
162777640.0001875641754089490.9184515358466560.5057462276792320.264013593625136
162780070.0001875641754089490.9184515358466560.5057462276792320.264013593625136

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX16279558.GA.PASSAC=121GT1/10/00/01/10/00/00/01/11/11/10/00/11/11/11/11/11/10/01/10/01/11/11/10/01/11/10/01/11/11/10/01/11/10/01/10/01/11/10/00/00/00/00/01/11/10/01/10/00/00/01/10/00/01/11/11/10/01/11/10/01/11/11/11/10/01/11/10/01/11/11/11/10/00/00/00/01/11/10/00/00/01/10/01/11/10/00/01/11/11/10/00/01/11/10/01/10/00/00/01/11/11/11/10/00/01/10/01/10/00/01/10/00/01/11/11/11/11/10/01/10/01/11/10/00/00/01/11/10/01/10/00/01/11/10/01/10/01/10/00/01/11/11/11/10/01/11/11/11/11/11/10/00/01/10/01/11/10/01/11/11/11/10/01/11/10/01/10/01/11/11/11/11/11/10/01/11/11/10/01/10/00/00/01/10/01/10/00/01/11/11/10/01/11/10/01/10/01/11/11/11/11/11/10/00/0
chrX16204173.TTT.PASSAC=1GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chrX16204174.TTT,TTT,TTTT.PASSAC=50,167,13GT2/22/02/22/02/02/22/02/21/20/02/02/22/22/21/01/00/02/22/22/22/22/22/02/20/02/02/21/00/02/12/22/21/02/02/20/02/02/02/22/02/22/00/02/22/02/01/22/21/11/02/22/02/01/01/21/00/02/21/12/22/02/22/21/01/22/22/22/21/22/22/22/21/22/02/22/21/21/20/21/02/22/22/02/02/12/02/21/02/02/02/02/23/22/20/01/22/01/02/22/21/22/20/02/12/22/21/23/21/22/21/02/02/02/31/22/22/22/21/22/22/02/02/00/02/02/02/30/12/01/10/20/01/23/22/02/01/22/22/02/12/32/01/12/02/22/01/22/23/30/02/21/21/21/22/22/22/12/02/03/22/22/02/20/21/02/22/12/03/30/00/02/23/22/02/02/22/02/22/23/22/32/02/21/02/02/02/12/02/02/22/22/02/22/32/02/20/12/21/11/22/00/02/12/02/0
chrX16279817.CT.PASSAC=113GT1/11/10/01/10/00/00/01/11/11/10/00/11/11/11/11/11/10/01/10/01/11/11/10/01/11/10/01/11/11/10/01/10/00/01/10/00/01/10/00/00/01/10/01/10/01/11/10/00/00/01/10/01/11/11/11/10/01/10/01/11/11/11/11/10/01/10/01/11/11/11/11/11/10/01/10/00/00/01/11/00/00/00/01/11/10/00/01/11/11/11/10/01/11/10/00/00/00/00/00/01/11/11/10/00/01/10/00/00/00/01/10/00/01/11/11/10/01/10/00/01/11/11/10/00/01/11/11/10/01/10/01/11/11/10/01/10/00/01/11/10/00/01/11/10/01/11/10/01/10/01/11/10/01/10/00/00/01/11/11/10/01/11/11/11/10/01/10/01/10/00/00/01/10/00/00/01/10/00/01/10/00/00/01/10/01/10/01/11/10/01/10/01/11/10/00/01/11/11/11/11/11/11/10/00/0
chrX16277764.AT.PASSAC=24GT0/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/01/10/00/01/11/10/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/01/10/00/00/00/01/10/00/00/00/00/00/01/10/0
chrX16278007.GA.PASSAC=22GT0/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/01/11/10/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/01/10/00/00/00/01/10/00/00/00/00/00/01/10/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX16279558GAGCCGTCAGAATGCGATAATGGCGCTCTGCTCGCGAGAGTTTCGGTTCTCDmelanogaster-FlyFactorSurvey-pho_SOLEXA_5_FBgn0002521
chrX16204173ATTCAAAAATATACATTTTTTTTTTTAATTTCGTTCTATTATTTAATTTAADmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768
chrX16204174TTCAAAAATATACATTTTTTTTTTTAATTTCGTTCTATTATTTAATTTAAADmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chrX16279817GATTTGTAAGAGTGGCTGTTAACTCCACTCTCCTTAGCCAGCAATCTATGTDmelanogaster-FlyFactorSurvey-lola.PF_SANGER_5_FBgn0005630
chrX16277764TTTTATATTTTCTTAAAGTTCGTTAATGGGATTCTAGTCAGATCGAGTTCA
chrX16278007AAGTAAACAAAATTCTTGCTAAATGTAGTAAATAATATTCTCTTAAATGTT