Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
169931787.93226935713085e-060.818331654582070.3021781903050380.385590225401888
169931884.91514857240065e-050.7212077813561490.2446431978844980.273782280056397
169932146.8548967700599e-050.7755795913745520.605907624201840.612216766704296
170162490.0001161607086160110.4503234834698660.5481996081903880.906025793753035
170162520.0001663972828436280.3717363711723910.4130390063875760.919594188954136

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX16993178.AG.PASSAC=8GT0/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chrX16993178.AACATA.PASSAC=71GT1/10/01/01/11/10/00/01/01/10/00/00/00/01/11/10/01/10/00/00/00/00/00/10/00/00/01/10/00/01/10/00/00/01/10/00/01/00/00/00/01/10/00/01/10/00/00/01/11/10/00/00/01/01/11/11/01/10/00/00/01/01/11/10/01/10/00/00/00/00/00/00/01/00/00/01/00/00/01/10/00/01/11/00/01/00/00/00/00/01/10/00/01/10/00/00/01/00/00/00/00/00/01/10/00/00/01/10/01/00/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/11/00/00/00/00/00/11/00/10/00/00/00/00/00/00/00/01/01/10/00/00/00/01/00/00/00/01/10/01/01/11/10/01/00/00/01/10/01/00/01/10/00/00/00/00/00/00/00/00/00/01/10/00/01/10/01/11/11/10/10/00/00/01/01/10/01/01/00/00/00/00/00/00/01/10/01/10/01/10/00/0
chrX16993188.AT.PASSAC=75GT1/10/00/01/11/10/00/00/01/10/01/10/00/01/11/10/01/10/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/01/10/00/01/10/00/00/01/10/00/01/10/00/00/01/11/11/10/00/01/11/11/11/11/10/00/00/01/11/11/10/01/10/00/00/00/00/00/00/01/10/00/01/10/00/01/10/00/01/11/10/01/10/01/10/00/01/10/00/01/10/00/00/01/10/01/10/00/01/11/10/00/01/11/10/01/10/00/00/00/00/01/11/10/00/00/00/01/10/01/10/01/11/10/00/00/00/01/11/11/10/00/00/00/00/00/00/00/01/11/10/00/00/00/01/10/00/00/01/10/01/11/11/10/01/10/00/01/10/01/10/01/10/00/00/00/00/00/00/00/00/00/01/10/00/01/10/01/11/11/11/10/01/10/01/11/10/01/11/10/00/00/00/00/00/01/10/01/10/01/10/00/0
chrX16993214.GA.PASSAC=75GT1/10/00/01/11/10/00/00/01/10/01/10/00/01/11/10/01/10/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/01/10/00/01/10/00/00/01/10/00/01/10/00/00/01/11/11/10/00/01/11/11/11/11/10/00/00/01/11/11/10/01/10/00/00/00/00/00/00/01/10/00/01/10/00/01/10/00/01/11/10/01/11/11/10/00/01/10/00/01/10/00/00/01/10/01/10/00/01/11/10/00/01/11/10/01/10/00/00/00/00/01/11/10/00/00/00/01/10/01/10/01/10/00/00/00/00/01/11/11/10/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/01/10/01/11/11/10/01/10/00/01/10/01/10/01/10/00/00/00/00/00/00/00/00/00/01/10/00/01/10/01/11/11/11/10/01/10/01/11/10/01/11/10/00/00/00/00/00/01/10/01/10/01/10/00/0
chrX17016249.TC.PASSAC=115GT0/00/01/10/00/00/01/11/10/01/10/01/11/10/00/01/10/01/11/11/11/11/11/10/01/11/11/11/10/00/00/00/01/10/00/00/00/01/11/11/11/10/00/00/00/01/11/10/00/01/11/10/00/01/11/11/10/01/10/01/10/00/00/01/10/01/11/10/01/10/00/00/00/01/11/11/11/10/01/10/01/11/10/00/00/01/11/11/10/00/00/00/01/11/10/01/10/01/10/01/10/00/00/01/11/10/00/00/00/01/11/11/11/11/10/01/11/11/10/01/10/01/11/11/11/11/10/00/01/11/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/10/00/01/10/00/00/01/11/11/11/10/01/11/10/00/01/11/10/01/10/10/01/11/11/11/10/00/00/01/11/11/11/10/01/11/10/00/00/00/01/10/00/01/11/11/11/10/01/10/01/10/01/10/01/10/0
chrX17016252.CT.PASSAC=115GT0/00/01/10/00/00/01/11/10/01/10/01/11/10/00/01/10/01/11/11/11/11/11/10/01/11/11/11/10/00/00/00/01/10/00/00/00/01/11/11/11/10/00/00/00/01/11/10/00/01/11/10/00/01/11/11/10/01/10/01/10/00/00/01/10/01/11/10/01/10/00/00/00/01/11/11/11/10/01/10/01/11/10/00/00/01/11/11/10/00/00/00/01/11/10/01/10/01/10/01/10/00/00/01/11/10/00/00/00/01/11/11/11/11/10/01/11/11/10/01/10/01/11/11/11/11/10/00/01/11/11/10/01/11/11/11/11/10/01/11/11/10/01/11/11/11/11/11/11/11/10/00/01/10/00/00/01/11/11/11/10/01/01/10/00/01/11/10/01/10/10/01/11/11/11/10/00/00/01/11/11/11/10/01/11/10/00/00/00/01/10/00/01/11/11/11/10/01/10/01/10/01/10/01/10/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX16993178GGTGGTCAGGAGTACATTAGACATATGTATATTGATAAGATCATATGATCADmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_3_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_3_FBgn0032651
chrX16993178GGTGGTCAGGAGTACATTAGACATATGTATATTGATAAGATCATATGATCADmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_3_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-Oli_da_SANGER_5_3_FBgn0032651
chrX16993188AGTACATTAGACATATGTATATTGATAAGATCATATGATCATTTTAAAGAGDmelanogaster-FlyFactorSurvey-CG8281_SANGER_5_FBgn0035824
chrX16993214AAGATCATATGATCATTTTAAAGAGAGATACTAAAAGTGGGGAAATAAACA
chrX17016249CGTGACACAATGGTTTTGGCGCTTTAACGCACAGCAGGGGTGAAAATAATGDmelanogaster-FlyFactorSurvey-ey_SOLEXA_5_FBgn0005558
chrX17016252GACACAATGGTTTTGGCGCTTTAACGCACAGCAGGGGTGAAAATAATGGAG