Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
176344591.88340582163854e-060.2399047025961060.7361042996554830.516845818401223
176204580.3041087801224289.2403833084505e-050.0009852530442527460.819941279082505
177177690.4180149659517640.01837618386333420.6505132264972760.000173643342898511
176345570.0003425666663304770.2144156072344260.6791961634313950.797986343470783
177172450.5482822440665760.0003691656351557160.5749643935021790.00561951486802269

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX17634459.AGTCAGATAGCGGGCTCTTCGCCCTA,AGTCAGATAGCGGGCTCGTCGCCCT,AGTCAGATAGCGGGCTCTTCGCCCA,AGTCAGATAGCGGGCTCTTCGGCCA,AGTCAGATAGCGGGCTCTTCGGCCT.PASSAC=66,7,2,2,1GT0/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/01/11/11/10/00/00/00/01/10/00/00/00/01/10/00/01/10/00/00/00/00/01/10/00/01/10/01/10/01/50/00/01/11/11/10/01/11/01/11/11/11/10/00/01/10/00/00/00/01/10/00/00/01/10/01/10/01/10/00/00/01/10/00/00/00/00/00/00/01/10/00/00/01/10/00/02/20/00/00/00/00/01/10/00/00/01/10/00/00/00/00/00/00/20/00/00/00/00/01/12/20/00/00/00/00/00/01/10/00/01/11/10/01/10/01/40/01/31/10/02/21/10/00/00/00/00/01/10/00/00/00/00/01/11/11/10/01/10/01/10/01/11/41/11/12/20/01/10/00/00/01/10/01/11/01/11/11/10/00/00/01/11/10/00/02/22/21/11/30/00/00/01/10/01/10/01/10/00/00/01/10/00/00/00/00/01/10/00/00/0
chrX17620456.TTTT.PASSAC=149GT1/11/10/00/00/10/00/11/10/01/11/00/11/00/00/10/01/11/11/10/11/10/00/01/01/11/01/11/10/00/00/10/01/10/00/10/10/11/00/00/11/10/00/11/11/00/11/10/01/10/11/11/10/01/01/11/01/00/11/10/00/10/00/00/01/10/11/01/10/01/01/11/00/11/01/10/11/11/11/10/11/01/10/11/01/00/01/10/11/00/01/10/10/00/11/11/01/01/10/00/00/11/01/10/01/00/10/00/10/10/00/10/10/01/11/10/11/10/01/11/11/10/10/01/10/10/10/01/00/00/11/01/00/00/11/11/01/11/10/01/01/00/00/01/11/01/10/00/10/01/01/10/01/00/01/00/11/00/01/10/10/01/01/10/00/01/10/01/00/01/01/00/01/10/10/01/10/10/10/01/00/00/10/00/01/01/00/11/01/11/11/11/01/00/10/10/11/11/10/01/11/00/00/10/10/1
chrX17620458.TTT.PASSAC=15GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/11/00/00/00/00/01/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/01/00/00/00/00/00/00/01/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chrX17717769.AG.PASSAC=54GT0/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/01/10/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/01/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/01/10/00/01/10/01/10/01/10/01/10/00/01/10/01/11/10/00/00/01/00/00/00/00/01/10/00/00/00/00/01/10/00/01/11/11/10/00/01/10/00/00/01/10/00/01/10/00/01/10/00/01/11/11/11/10/00/01/11/10/00/01/10/00/00/00/01/10/01/10/00/00/01/11/10/00/00/00/00/00/01/10/00/00/01/10/10/01/11/10/00/00/00/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/00/01/10/01/10/00/01/10/00/00/00/00/00/01/10/00/00/01/10/00/00/00/01/00/0
chrX17634557.TC.PASSAC=94GT0/00/00/00/00/00/00/00/01/10/01/10/00/00/01/10/01/11/11/10/00/00/00/01/10/01/10/00/01/10/00/01/10/00/00/00/00/01/11/10/01/11/11/11/11/10/01/11/11/11/10/01/11/11/11/11/11/10/00/01/11/10/00/00/01/11/10/00/01/10/01/10/01/10/00/00/01/10/00/00/00/00/00/00/01/10/00/01/11/10/00/01/10/00/01/10/00/01/10/00/00/01/10/00/00/00/00/00/00/01/11/10/00/00/01/11/10/00/00/00/01/10/01/10/00/01/10/01/11/10/01/10/01/11/10/01/11/10/00/00/00/00/01/10/00/00/01/11/11/11/11/10/01/10/01/10/01/11/11/11/11/10/01/10/00/00/01/10/01/11/01/11/11/10/00/01/11/11/10/00/01/11/11/11/10/01/11/11/10/01/11/11/10/00/00/01/10/01/10/01/10/01/11/10/00/0
chrX17717245.GA.PASSAC=49GT0/00/00/01/10/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/01/10/00/01/10/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/00/01/11/10/00/00/00/00/00/00/00/01/10/01/10/01/10/00/00/00/00/01/10/01/10/00/00/01/10/00/01/10/01/11/10/00/00/01/10/00/00/00/01/10/00/00/00/00/01/10/00/01/10/01/10/00/01/10/00/00/01/10/00/01/10/00/01/10/01/10/00/00/01/10/00/01/10/00/00/00/00/00/00/00/01/10/01/10/00/00/00/01/11/10/00/00/00/00/01/10/00/00/01/10/00/01/10/00/00/01/10/00/00/01/10/00/00/00/00/00/00/00/01/11/10/00/00/00/00/01/10/00/00/01/10/00/00/01/10/01/10/00/01/10/00/00/00/00/00/01/10/00/00/01/10/00/01/10/01/10/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX17634459CAGCTGTTCGGCGGCAGTACGGCCAGTCAGATAGCGGGCTCTTCGCCCTACNA
chrX17620456ATGTCACATTGGAGAGCCTTTTTTTTTTGAGTTATTATTGCGAACAAGCTGNA
chrX17620458GTCACATTGGAGAGCCTTTTTTTTTTGAGTTATTATTGCGAACAAGCTGCTDmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-hb_SANGER_2.5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-hb_SOLEXA_5_FBgn0001180 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chrX17717769CTTGTTATTCGGTGGCTGGTGCTGATTGTGGTGCTCCGTCGGTGGCTTCTC
chrX17634557TCCGCCGAAGAACCTTTTTCTACTTAAGTCCACGCCCAAACTGTCAACGGADmelanogaster-FlyFactorSurvey-Bap_Cell_FBgn0004862
chrX17717245TACGTCTTTGACTTTCTCAATGCTGGAGGTGAACTGCAGTGCCCGGGGCTC