Reference allele is: Major

P-values for top 5 SNPs

PositionJointP68_specificP1012_sepecificP24_specificP
21351021.50502875261442e-050.7897975256662350.4354858004485590.86809455452342
20633970.8048926160163960.1127534049769750.0006305953263614610.190062925785794
21744790.9417867341466630.02227248092317840.0009173102251378320.262015073038706
22378070.6614309406614450.265430532510690.07530845751610920.000943826152857461
22580310.001312942769494430.1789350251448790.8537944604395560.0661777860787338

Genotype info for top 5 SNPs

#CHROMPOSIDREFALTQUALFILTERINFOFORMATDGRP-021DGRP-026DGRP-028DGRP-031DGRP-032DGRP-038DGRP-040DGRP-041DGRP-042DGRP-045DGRP-048DGRP-049DGRP-057DGRP-059DGRP-069DGRP-073DGRP-075DGRP-083DGRP-085DGRP-088DGRP-091DGRP-093DGRP-100DGRP-101DGRP-105DGRP-109DGRP-129DGRP-136DGRP-138DGRP-142DGRP-149DGRP-153DGRP-158DGRP-161DGRP-176DGRP-177DGRP-181DGRP-189DGRP-195DGRP-208DGRP-217DGRP-223DGRP-227DGRP-228DGRP-229DGRP-233DGRP-235DGRP-237DGRP-239DGRP-256DGRP-280DGRP-287DGRP-301DGRP-303DGRP-304DGRP-306DGRP-307DGRP-309DGRP-310DGRP-313DGRP-315DGRP-317DGRP-318DGRP-319DGRP-320DGRP-321DGRP-324DGRP-325DGRP-332DGRP-335DGRP-336DGRP-338DGRP-340DGRP-348DGRP-350DGRP-352DGRP-354DGRP-355DGRP-356DGRP-357DGRP-358DGRP-359DGRP-360DGRP-361DGRP-362DGRP-365DGRP-367DGRP-370DGRP-371DGRP-373DGRP-374DGRP-375DGRP-377DGRP-379DGRP-380DGRP-381DGRP-382DGRP-383DGRP-385DGRP-386DGRP-390DGRP-391DGRP-392DGRP-395DGRP-397DGRP-399DGRP-405DGRP-406DGRP-409DGRP-426DGRP-427DGRP-437DGRP-439DGRP-440DGRP-441DGRP-443DGRP-461DGRP-486DGRP-491DGRP-492DGRP-502DGRP-505DGRP-508DGRP-509DGRP-513DGRP-517DGRP-528DGRP-530DGRP-531DGRP-535DGRP-551DGRP-555DGRP-559DGRP-563DGRP-566DGRP-584DGRP-589DGRP-595DGRP-596DGRP-627DGRP-630DGRP-634DGRP-639DGRP-642DGRP-646DGRP-703DGRP-705DGRP-707DGRP-712DGRP-714DGRP-716DGRP-721DGRP-727DGRP-730DGRP-732DGRP-737DGRP-738DGRP-748DGRP-757DGRP-761DGRP-765DGRP-774DGRP-776DGRP-783DGRP-786DGRP-787DGRP-790DGRP-796DGRP-799DGRP-801DGRP-802DGRP-804DGRP-805DGRP-808DGRP-810DGRP-812DGRP-818DGRP-819DGRP-820DGRP-821DGRP-822DGRP-832DGRP-837DGRP-843DGRP-849DGRP-850DGRP-852DGRP-853DGRP-855DGRP-857DGRP-859DGRP-861DGRP-879DGRP-882DGRP-884DGRP-887DGRP-890DGRP-892DGRP-894DGRP-897DGRP-900DGRP-907DGRP-908DGRP-911DGRP-913
chrX2135102.TG.PASSAC=127GT1/00/10/00/10/10/10/10/10/10/00/10/00/00/10/10/00/10/10/10/10/00/00/10/00/00/00/00/10/00/10/00/00/10/00/00/00/10/10/00/00/00/00/10/10/10/01/10/10/00/00/10/00/10/10/10/00/10/00/00/00/00/00/10/10/10/00/10/00/10/10/00/00/10/00/10/10/00/00/10/10/00/10/00/00/10/10/10/10/10/10/10/10/10/00/10/10/00/10/10/00/10/10/10/00/00/10/10/10/10/10/00/10/10/10/00/10/10/00/10/10/10/00/10/00/00/10/10/11/00/10/00/10/10/00/00/10/10/10/00/00/00/10/10/00/00/10/10/00/00/00/10/00/10/00/10/10/10/10/00/10/10/10/10/10/10/10/10/10/10/10/10/00/10/10/00/00/10/10/00/10/10/00/10/10/10/10/10/00/10/10/10/10/00/10/00/00/01/00/10/10/10/10/10/00/0
chrX2063397.GT,TTT.PASSAC=45,4GT0/00/00/00/00/00/00/00/00/00/00/00/10/00/00/10/00/00/00/10/10/00/00/00/20/00/00/00/00/00/11/10/10/00/00/10/00/00/00/00/10/00/00/00/00/00/00/00/00/10/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/10/00/00/00/00/00/10/00/00/00/10/10/10/00/00/00/00/00/00/00/10/00/00/00/00/10/00/00/00/10/10/00/00/00/10/00/00/00/00/00/00/00/00/00/00/10/00/00/10/10/00/10/00/10/00/00/20/00/10/00/00/00/10/00/00/11/10/00/00/00/00/00/10/00/00/00/00/00/00/00/01/10/00/00/10/00/00/10/00/00/00/00/00/10/00/00/00/20/00/10/00/00/01/10/00/10/00/00/00/10/00/00/00/20/00/00/00/00/00/00/00/00/10/00/00/00/11/10/10/1
chrX2063397.GTTTG,GTTTTT.PASSAC=1,2GT0/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/20/00/00/00/00/00/00/20/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/0
chrX2174479.GT,TG,TTG.PASSAC=5,82,23GT0/02/20/00/03/02/30/10/02/00/02/00/03/00/00/00/02/00/00/00/03/00/00/00/00/00/02/00/02/02/00/00/00/00/00/02/30/00/00/02/00/00/02/02/22/00/02/02/20/00/00/00/00/00/22/02/02/00/00/00/02/00/00/02/02/00/10/00/02/20/00/00/00/00/00/00/00/00/00/00/20/00/00/02/03/02/00/03/30/10/22/00/02/00/03/00/30/00/02/00/02/00/10/32/30/00/20/02/02/32/20/00/02/00/20/00/00/00/20/03/02/00/02/02/20/00/00/20/22/00/00/00/00/20/00/20/32/00/02/30/20/20/20/20/00/02/00/03/00/00/00/00/02/02/00/20/00/00/00/21/02/20/00/02/20/00/02/00/00/02/32/00/02/20/03/20/00/02/00/02/03/03/20/02/00/02/02/00/22/02/02/03/00/00/02/00/02/00/02/20/22/02/33/20/00/0
chrX2237807.TAAACTAAACTT,TAAACT.PASSAC=3,61GT0/00/00/02/02/02/22/20/02/20/00/20/00/00/00/00/00/00/00/02/02/00/00/00/00/00/02/00/00/02/00/02/02/00/00/02/00/00/00/00/00/00/02/02/22/00/00/02/00/00/00/02/02/00/00/00/00/00/02/20/00/00/22/20/00/00/00/00/00/02/00/02/20/00/00/00/00/20/20/00/00/00/00/02/00/00/00/00/02/00/20/00/00/00/00/00/02/00/00/00/00/22/00/00/00/00/00/00/02/02/20/00/02/22/00/00/02/20/20/02/00/20/00/02/00/20/02/00/00/02/00/00/00/00/00/00/00/00/00/02/02/02/00/00/00/00/02/02/00/02/00/00/02/02/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/01/10/00/00/02/00/00/00/00/00/00/00/00/20/02/22/02/00/00/00/00/02/00/02/00/00/00/00/10/02/20/00/00/00/02/20/0
chrX2258031.TG.PASSAC=14GT0/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/01/10/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/10/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/01/10/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/10/00/00/00/00/00/00/00/00/00/00/00/00/10/00/00/10/00/00/00/00/00/00/00/0

Sequences and list of disrupted MOTIFs around top 5 SNPs

ChrPositionSequenceMotifs
chrX2135102GACAGTCTGGTGGATACAGGCAGGTGGGTTAGGCTCTGGCTTCAACTTTTTDmelanogaster-FlyFactorSurvey-ase_da_SANGER_10_FBgn0000137 , Dmelanogaster-FlyFactorSurvey-ase_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-ato_da_SANGER_5_3_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-ato_da_SANGER_5_3_FBgn0010433 , Dmelanogaster-FlyFactorSurvey-CG17181_SANGER_5_FBgn0035144 , Dmelanogaster-FlyFactorSurvey-CG17181_SOLEXA_5_FBgn0035144 , Dmelanogaster-FlyFactorSurvey-crol_F7.16_SANGER_5_FBgn0020309 , Dmelanogaster-FlyFactorSurvey-l(1)sc_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-l(1)sc_da_SANGER_5_FBgn0002561 , Dmelanogaster-FlyFactorSurvey-nau_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-nau_da_SANGER_5_FBgn0002922 , Dmelanogaster-FlyFactorSurvey-net_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-net_da_SANGER_10_FBgn0002931 , Dmelanogaster-FlyFactorSurvey-sc_da_SANGER_10_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-sc_da_SANGER_10_FBgn0004170 , Dmelanogaster-FlyFactorSurvey-wor_SANGER_2.5_FBgn0001983 , Dmelanogaster-FlyFactorSurvey-wor_SOLEXA_2.5_FBgn0001983
chrX2063397AGGATCCTGCCATTCAGTGCAATTGTTTTTTTTTTTTTGGGCCACGATGAADmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-jim_F1.9_SOLEXA_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-jim_SANGER_2.5_FBgn0027339 , Dmelanogaster-FlyFactorSurvey-rn_SANGER_10_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768
chrX2063397AGGATCCTGCCATTCAGTGCAATTGTTTTTTTTTTTTTGGGCCACGATGAANA
chrX2174479AGAAAAAATTTTCGTTTTTTTTTTGTGGTTTTTGCTTGTTTGTCTTACTTTDmelanogaster-FlyFactorSurvey-CG2052_SANGER_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-CG2052_SOLEXA_2.5_FBgn0039905 , Dmelanogaster-FlyFactorSurvey-rn_SOLEXA_5_FBgn0259172 , Dmelanogaster-FlyFactorSurvey-run_Bgb_NBT_FBgn0003300 , Dmelanogaster-FlyFactorSurvey-run_Bgb_NBT_FBgn0013753 , Dmelanogaster-FlyFactorSurvey-sqz_SANGER_5_FBgn0010768 , Dmelanogaster-FlyFactorSurvey-sqz_SOLEXA_5_FBgn0010768 , Dmelanogaster-JASPAR_CORE-run::Bgb-MA0242.1
chrX2237807AAGACTACTGAAACTAAACTAAACTAAACTAAACTAGCTGATCGCAATTACNA
chrX2258031GGCGCCCAACGGGGGGCCTTTGGGTTGAGGAGGAGGGCCATGTGGGAAAATDmelanogaster-FlyFactorSurvey-CG33557_da_SANGER_5_FBgn0000413 , Dmelanogaster-FlyFactorSurvey-CG33557_da_SANGER_5_FBgn0053557